NONHSAT052956
Revision as of 22:14, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052956 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1186 nt |
Genomic location |
chr17-:30831585..30832662 |
Exon number |
1 |
Exons |
30831585..30832662 |
Genome context |
|
Sequence |
000001 CTTTCTGTCT ATATAATATA TCACAAACAG GGAGCAGACA TAGGGTGACA GAATTGTGTG TTCCCAGGAA AGCTTGTGGG 000080
000081 GAAAAAAAAA AGAAAAGAAG TAAGATTACA GAGGTTCCTT GCCACTTTGC CAGGCTGGAA GGCAGACTTC TTCTGGTGTC 000160 000161 CTGTTCACAG ACGGGGCAGC CTGCGGAAGG CCCTGCCACA TGCAGGGCCT CGGTCCTCAT TCCCTTGCAT GTGGACCCGG 000240 000241 GCGTGACTCC TGTTCAGGCT GGCACTTCCC AGAGCTGAGC CCCAGCCTGA CCTTCCTCCC ATACTGTCTT CACACCCCCT 000320 000321 CCTTTCTTCT GATACCTGGA GGTTTTCCTT TCTTTCCTGT CACCTCCACT TGGATTTTAA ATCCTCTGTC TGTGGAATTG 000400 000401 TATTCGGCAC AGGAAGATGC TTGCAAGGGC CAGGCTCATC AGCCCTGTCC CTGCTGCTGG AAGCAGCACA GCAGAGCCTC 000480 000481 ATGCTCAGGC TGAGATGGAG CAGAGGCCTG CAGACGAGCA CCCAGCTCAG CTGGGGTTGG CGCCGATGGT GGAGGGTCCT 000560 000561 CGAAAGCTCT GGGGACGATG GCAGAGCTAT TGGCAGGGGA GCCGCAGGGT CTTTTGAGCC CTTAAAAGAT CTCTCTGATG 000640 000641 ACTGTGTGGA GGACATCACA CAGTCTGCCC CTGTGCTGGG GCAGACCCAA GGCAGAGAAG CCAGTCCGGG CTATGACAGT 000720 000721 AACCAGGAAG GAGAGAAAAG GGTCTGGGCT GAGGCCCCGG CAGGGGACAC AGACAAAAAG TGCAATCAGT AGAACTCAGA 000800 000801 GACTGTCGGC AGTGGAGAAG GAGCGGGAGC GGGGCTGCCT GCCAGCTCTC TGGCCTCAGT GACCGTGCAG ACGACACCTC 000880 000881 TCACTGCATA GGCTTGATGG GAGGAGGGAA GCACTTTGAG GGAGGGGGCC AAGAGGATGA TCTCAGCATT GGCCATGTGA 000960 000961 AGACTCAGCT GTCTGCAGAG CATTCCGGGG ATTTGTCTAG GAAGTGGCTG AAAAGACATG CATGGACCTC ATGCTAAGAG 001040 001041 AGGGGACACG GACTGGATCA TTGTCATTGA AACCACAGGC ATGAGTGATG CCACTGTGAA ATAATGTATA AAATGAAAGG 001120 001121 GGCCGAAGAT GAAGCAGTAT TTGAGGAGTG AGAAAGCAAA GCCAAAACAG CTCCCGCAGG AGTCCC |
Predicted Small Protein
Name | NONHSAT052956_smProtein_416:616 |
Length | 67 |
Molecular weight | 7366.3051 |
Aromaticity | 0.0757575757576 |
Instability index | 66.6303030303 |
Isoelectric point | 9.94769287109 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0306987659929 |
Amino acid sequence | MLARARLISPVPAAGSSTAEPHAQAEMEQRPADEHPAQLGLAPMVEGPRKLWGRWQSYWQ GSRRVF |
Secondary structure | LLLLEELLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH LLLLLL |
PRMN | - |
PiMo | - |