NONHSAT052956

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT052956

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1186 nt

Genomic location

chr17-:30831585..30832662

Exon number

1

Exons

30831585..30832662

Genome context

Sequence
000001 CTTTCTGTCT ATATAATATA TCACAAACAG GGAGCAGACA TAGGGTGACA GAATTGTGTG TTCCCAGGAA AGCTTGTGGG 000080
000081 GAAAAAAAAA AGAAAAGAAG TAAGATTACA GAGGTTCCTT GCCACTTTGC CAGGCTGGAA GGCAGACTTC TTCTGGTGTC 000160
000161 CTGTTCACAG ACGGGGCAGC CTGCGGAAGG CCCTGCCACA TGCAGGGCCT CGGTCCTCAT TCCCTTGCAT GTGGACCCGG 000240
000241 GCGTGACTCC TGTTCAGGCT GGCACTTCCC AGAGCTGAGC CCCAGCCTGA CCTTCCTCCC ATACTGTCTT CACACCCCCT 000320
000321 CCTTTCTTCT GATACCTGGA GGTTTTCCTT TCTTTCCTGT CACCTCCACT TGGATTTTAA ATCCTCTGTC TGTGGAATTG 000400
000401 TATTCGGCAC AGGAAGATGC TTGCAAGGGC CAGGCTCATC AGCCCTGTCC CTGCTGCTGG AAGCAGCACA GCAGAGCCTC 000480
000481 ATGCTCAGGC TGAGATGGAG CAGAGGCCTG CAGACGAGCA CCCAGCTCAG CTGGGGTTGG CGCCGATGGT GGAGGGTCCT 000560
000561 CGAAAGCTCT GGGGACGATG GCAGAGCTAT TGGCAGGGGA GCCGCAGGGT CTTTTGAGCC CTTAAAAGAT CTCTCTGATG 000640
000641 ACTGTGTGGA GGACATCACA CAGTCTGCCC CTGTGCTGGG GCAGACCCAA GGCAGAGAAG CCAGTCCGGG CTATGACAGT 000720
000721 AACCAGGAAG GAGAGAAAAG GGTCTGGGCT GAGGCCCCGG CAGGGGACAC AGACAAAAAG TGCAATCAGT AGAACTCAGA 000800
000801 GACTGTCGGC AGTGGAGAAG GAGCGGGAGC GGGGCTGCCT GCCAGCTCTC TGGCCTCAGT GACCGTGCAG ACGACACCTC 000880
000881 TCACTGCATA GGCTTGATGG GAGGAGGGAA GCACTTTGAG GGAGGGGGCC AAGAGGATGA TCTCAGCATT GGCCATGTGA 000960
000961 AGACTCAGCT GTCTGCAGAG CATTCCGGGG ATTTGTCTAG GAAGTGGCTG AAAAGACATG CATGGACCTC ATGCTAAGAG 001040
001041 AGGGGACACG GACTGGATCA TTGTCATTGA AACCACAGGC ATGAGTGATG CCACTGTGAA ATAATGTATA AAATGAAAGG 001120
001121 GGCCGAAGAT GAAGCAGTAT TTGAGGAGTG AGAAAGCAAA GCCAAAACAG CTCCCGCAGG AGTCCC
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Predicted Small Protein

Name NONHSAT052956_smProtein_416:616
Length 67
Molecular weight 7366.3051
Aromaticity 0.0757575757576
Instability index 66.6303030303
Isoelectric point 9.94769287109
Runs 7
Runs residual 0.0445472690982
Runs probability 0.0306987659929
Amino acid sequence MLARARLISPVPAAGSSTAEPHAQAEMEQRPADEHPAQLGLAPMVEGPRKLWGRWQSYWQ
GSRRVF
Secondary structure LLLLEELLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH
LLLLLL
PRMN -
PiMo -