NONHSAT053295
Revision as of 22:15, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053295 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2319 nt |
Genomic location |
chr17-:36202573..36233931 |
Exon number |
5 |
Exons |
36202573..36204338,36204746..36205003,36214022..36214127,36214770..36214848,36233822..36233931 |
Genome context |
|
Sequence |
000001 GCTGGGCCCA TGAGGTGTGT GCTCTGTATA TTCCGGAGGT ACAATTTGCC AATGATTCCA CAATGGAACC AATTGTTTTA 000080
000081 CAGTCTGTTC CACATGATCA TTGTAATAAG GTTGAGACTG AGCTAAAGTT AATCTGCGGC GATGTTCTGG ATGCACTGGA 000160 000161 CAAACACCTC ATTCCAGCAG CTACCACTGG AAAGGGGTCT ACCACAGGTA TCTGGCAGAA TTTGCCACAG GAAATGACAG 000240 000241 GAAGGAGGTG GCAGAGAACA GCTTGGTGGC TTACAAAGCT GCTAGTGATA TTGCAACGGG TTTCTCCATG TTGGCCAGGC 000320 000321 TGGGCTCGAA CTCCTGGTTT CAAGTGAACC TCCCAACTTG GCTTCCCAAA GTGCTGAGAT TACAGGCGTG AGCCACCATC 000400 000401 CCCGCCCCCT CAAAATCTGT TAGGACGACA GTCTCGCCAA GGCAATGCAG TCGCAATATG CCGTTTCCAT TGCAATCACA 000480 000481 ATATGACATT TCCATTTACT TTGGATTATA CGTCATTATG AATATTAACA AGACTTAAAA AGGACACCTT CGGATTTCCT 000560 000561 GTCTTTGTGG GCTGATGGAC TAGAGGAAAG ATGCCTGTTG ACGGTCAAAG GCAGAGCCTC TTCGGCAGCT TCTTAAAGCG 000640 000641 CCTTCTTTAA CAGAGAAACA ATCTGCATGG GGTCTAGAAC GGTTCTGAAA TCCTGCTGAA GGTTTCGAAA CTTCCTGGGG 000720 000721 GGGGTCTCCT GCCAGAGCGC CTACGCTGCC TCTGGGCTGG CTGGCCAGTG AGCCCCGTCT CACAGCCTGA CAGTCCCCAC 000800 000801 ATCAGCCCGG ACCGTCTTTC GGGACCAGCC CCATTTGCAC AGCCTGAGCT GTAGAGGGCC CTGGAGTTCG GAGTTCTTGT 000880 000881 CCCAACTGTG CCCCTGCAGG CCTGTTCCAC CCACTGAGGC TCAGTTTCCC CATGTGCCTA ATGAGGAAGT CATGCTAGGT 000960 000961 GGGGCTTACA GCCTCTTGCA GCTTTGCCAT TGATCACTTC CGTGTCTTCA GAGAGGCTGC CAAGTCTCCT CTGAATGAAG 001040 001041 TTCCCCAAAA AGCAAACGTA AGAAAATACA CAGAGCTTAC CCAGACACCA GGCCCTTTAG AAATAGACCA TTTCTTACCT 001120 001121 TAGGCCCCCA GAAGGTCCTC ATTCTAGCTT TGTGGAGAAA AGAAGAGTCT TTGCCTCAGC CCCCAGAGGT TGGGGTGGGG 001200 001201 TGGCTGAATT TTGAGGCTGG GATTGGCAAC TCTGGTGAAG CCCAAAGTGA CACGGATGGT TTCAAAGCCA CCTAGAGGAT 001280 001281 AAGGTGTCAG GACAGTGACA AGACCCCAGG TCCCTATCAC ACACCAGAGC TCACTGAGCC TCCACCTGGG GTCTCTGCTG 001360 001361 AATCTCTGAC AGGCTAGGAG AGAAGGGACT GGGGTTACTG ACCCCCAGAA AGTCAGAGAA AGTGGCAGTT GGAGGACCTG 001440 001441 GGTTTGAGTC CTGGATCACC CCTTCCCCGC CTTGGCAAAC TACTCAGACT CTGGAAACCT GTTTCACCTG TAAGATGGGG 001520 001521 ATGACAATCA AACCCACCTT GCAGGGCCGT GAAGATGCTT AAGACAAGTG CATGCAAAAA CTTTCACACA CACAAAGCCT 001600 001601 TCCTAAAGAT GGGGAGACAA GGCCTCATGA GCAGCAGGTG GCCAGGCACT ATGTGGGGGC TGGAGTCCTG TTTTCCCTTC 001680 001681 AACCTGGGAA AGGACTGATG GGCACTTAGT AGGTTTTGAA TCATGACCCT GGACCTCAGG TGGCGGTATG CTTTGTGTCT 001760 001761 GCAGCAGAAG GCCCCAGCCT CGTGCCTGTG AGTCCCACTA CCGATGTTGA AGGGGTGGAC AGCAGGCGGG TGAGCCCCAG 001840 001841 GCTGGCAGCT AGCAAGACCT CTCACGTGTG AGCCCAGCAC CCCACTTCCC CTGAAATGTG ATGTCCAGTG CTCCAGGCTG 001920 001921 GGGGCCGTGG ATCCTGATTC CAGCTGTGTG AGGGCTGGAA GGCCCTGGGC AGGTCACCTG ACCTCTCTGG GCCTATTTCC 002000 002001 ATCACACACT TGAGGGGCTG AGCACACTGG ACTCTATAGC TGTACAACTC CTTGGCTCTG CTTTTGTTCC TGAGGGCCCC 002080 002081 TTAGTAGGCA GGGAAAGTGA GGGCCTCAGG GCTGGGCCCC AAGACTCAGA TGCTCTCAAC CCCTTCCTGG AGTGCCTAAC 002160 002161 TCAGGGGAGC AGACAGGCCC AGCAGGCAGG GTGCCTCTCT TGCTCAACTC CTGGAGCTAT ATGTTTTTTT AGCTTACTAT 002240 002241 TTTACTTAAG AATAGATCAT GAGCATTGAC TATTCTAAAA CATGACTTTC ATGACTATAT AAAAGTCCAT TGTATCAAT |
Predicted Small Protein
Name | NONHSAT053295_smProtein_62:346 |
Length | 95 |
Molecular weight | 10672.3358 |
Aromaticity | 0.0744680851064 |
Instability index | 46.970212766 |
Isoelectric point | 8.98699951172 |
Runs | 11 |
Runs residual | 0.0117946345976 |
Runs probability | 0.0249152896211 |
Amino acid sequence | MEPIVLQSVPHDHCNKVETELKLICGDVLDALDKHLIPAATTGKGSTTGIWQNLPQEMTG RRWQRTAWWLTKLLVILQRVSPCWPGWARTPGFK |
Secondary structure | LLLEEEELLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLHHHLLLLHHHLL LHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |