NONHSAT053428

From LncRNAWiki
Revision as of 22:16, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT053428

Source

NONCODE4.0

Same with

,

Classification

sense

Length

564 nt

Genomic location

chr17+:37360417..37360980

Exon number

1

Exons

37360417..37360980

Genome context

Sequence
000001 CAAGGCCCGC AAGAAGCTCC TGGCGTAAGT TTCTTTTCAG AGTCTTAGGG GAACATTCTT AGACCTTTGA GAGTTGTTCT 000080
000081 TAGATACTTA AAATGTGCCA ATGCCTAAGT CTTGACTTGC ACGTAGTCTG TCTTAGGAAT ACAGCTGTTC CCTTAGAGGC 000160
000161 ACCCACTCCT CTGTCCTGTA CACACCCACT CTTCCTGTCT CGTAGGGACT AGAGGTTAGT TGAAGCAGGA GCCTTTGGTG 000240
000241 GGCCCAGCAA CTCATTCCAG AAGCTGACTA GGCTCAAAGG GAGAGGTCTG GGGATGTGCT TCTGTCTCCC TAGCATCTCA 000320
000321 TCTCTTCCCA AACTGACCCG TCTTTTCTCT TCCCTGACCA GTGACCAGGC TGAGGCCCGC AGGTCTAAGA CCAAGGAAGC 000400
000401 ACGCAAGCGC CGTGAAGAGC GCCTCCAGGC CAAGAAGGAG GAGATCATCA AGACTTTATC CAAGGAGGAA GAGACCAAGA 000480
000481 AATAAAACCT CCCACTTTGT CTGTACATAC TGGCCTCTGT GATTACATAG ATCAGCCATT AAAATAAAAC AAGCCTTAAT 000560
000561 CTGC
[back to top]

Predicted Small Protein

Name NONHSAT053428_smProtein_293:484
Length 64
Molecular weight 7370.4953
Aromaticity 0.031746031746
Instability index 84.7523809524
Isoelectric point 9.85882568359
Runs 9
Runs residual 0.00210560414642
Runs probability 0.0399517164222
Amino acid sequence MCFCLPSISSLPKLTRLFSSLTSDQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEE
TKK
Secondary structure LEEELLLLLLLHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHH
LLL
PRMN -
PiMo -