NONHSAT053429
Revision as of 22:16, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053429 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1782 nt |
Genomic location |
chr17+:37394028..37401340 |
Exon number |
6 |
Exons |
37394028..37394166,37394649..37394800,37394940..37395008,37396261..37396367,37399454..37399585,37400158..37401340 |
Genome context |
|
Sequence |
000001 GTGCAGCCCA ACCCCACGCT GAGCTGTTTC ACAGCCGGCC CTGCCCCCTC TCCAAGATGC TGTTTTGGCA CAACCAGCCG 000080
000081 GAGCATCTAT GGCCCAGTCC TGGGGACCTA TACCCTGGGC CCCCCAGCAG CCTGCTCAGG GAGCCCCTGC CCTTGCCCTA 000160 000161 CTTGAAGCAG GAGGAGCTGC CCAACATCCC TGGCACGGAG CTGCCCTGCC CCATGTTCTA GTACGTGCTC TGTGCAGCCA 000240 000241 CCTCGCCAGC CGTGAAGCAG CAGGAGGAGA CCCTCACCTA CCTGAACCAG GTCCTATGAG GTCCGGATGC TCTGCAGCTC 000320 000321 CAAGCCGTGT GATGCCACCC AGTGCCCCCA GCTGCTGAAG ATGTGCCACT GTCCGTGGGA GTGATAGAAC CCCAAGTGCT 000400 000401 GCTCTCACAA CTCAACATGG TGGAGTTTCA CTGGGACCCA ACAAAGAGGA CATCTCTCTT CCTGCAGTTC ACACCTCGGA 000480 000481 AGAAAGGTGG AGAGAAAGGC ATCCCTTTCC GCCTCCAGAT CGACACCTTC AGGCCCAGTG ACAAGGGGCT GCCGCTAGAC 000560 000561 CACCTGCACT CAGCTGGCTG CCTCATCAAG GTGTTTAAGC ACAAAGGAGC GGAAACTGAA AATGGACCGT GAGAAGATGG 000640 000641 AGAAACAGCC CCTGCATGAG AGGGACAAGT ATCAGACCGC CTGCGAGAGC ACTGTCTTCT TGGAGGTGTG TGTGTTGGGG 000720 000721 CGAGAGCAGG AGGGGAGAGT TGGAGAAAAG ATCCTCACGG TACAGATGGG GAAATGGAGG CCTCCAGGGC TCTGACTGCT 000800 000801 GCAAGCCCAT CACAGCCCCC TGGGGACTCC ACCACTTCCT GCAAAGGACA CTCTCTGCCC TGTCTGTGGT TGTTGAAGCT 000880 000881 TCCAGGAGCT GACGCCCTCC AGGCTGCCTG TCCTACGCGG GCCATCGCCA CCTCCTTCCT TGTGTGCTCC CTCTGCCTGG 000960 000961 CCCCCTCCTC CTCCTGCTGC TCCTCCTGGC CAGCTCCTCC AAGGCCCTTC CTCACTGCCC CAGGCCCGCC GGGTGGTTAA 001040 001041 CTTCTTCCTT CCTGTGGAAA CCCAGTCCAC TTGTCAGGCC CCTGGTCAGC TCTTAATATA CAGGTGGAGA GAAGGGAGCA 001120 001121 ATGACCAGCC TTGCTGTGTG TTTGCCTGCA GTGTTCGCCA TGGCCGGAGT CCCCTGCAAG GCCCCGGCCA CCTCTCAGCT 001200 001201 CTCTGGCTCT GACCTCTCCC CACTCCTGCA GGCTCTTGTC CCCAGAAAGG TGAGGCAGGA TGAGCACCTC CTGTCAGCCC 001280 001281 TTTGGGGTGA GAGTGAAGAA AAGAGCTCCC AGCCCAGGCA TGGAGCAAAG GGCAGGGCTG GGGATTGGTG GGGAATTTGT 001360 001361 GGGGTGAGGA CAGGAGCAAG CTCTGTGTCC CAGGGCAGGC CTGGAGGAAG GGTGTTGGTG GAGGGAGACT GGCTGTAATG 001440 001441 CTCCGCAGAG TTCTTGAACC TTTGCTCCTC CTCATAGGCT CTGTTCCTCA CCACCATTCG CTCTGGATAC CTTGGGGTGT 001520 001521 AGCCCAGTTG AGGTGAGCCT TCCCCTTCCC ACTCTCCACT GTCCCAAAGC CTTCTCCGCA GCTTCATCTC AAGCTCCAGA 001600 001601 ATGGAGTGGC CCTGCCCCCT GGTGGCCAGA TGTGATATGG CCATAGATTG TAACTTACCT GATAAGACTG GGCAGGAAGA 001680 001681 GCCTCCCTTC TCAGACTTGG GACCTCCCAA GGGAGGGGCT GTTTCCCTTT CTTGTTCTGT CCCTGGGTCC TGGTATTACC 001760 001761 TGGACCATCC ATTTTATACC TC |
Predicted Small Protein
Name | NONHSAT053429_smProtein_773:1039 |
Length | 89 |
Molecular weight | 8837.151 |
Aromaticity | 0.0454545454545 |
Instability index | 80.2829545455 |
Isoelectric point | 8.23516845703 |
Runs | 10 |
Runs residual | 0.0177272727273 |
Runs probability | 0.049841017488 |
Amino acid sequence | MEASRALTAASPSQPPGDSTTSCKGHSLPCLWLLKLPGADALQAACPTRAIATSFLVCSL CLAPSSSCCSSWPAPPRPFLTAPGPPGG |
Secondary structure | LHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLHHHHHHHLLLLHHHHHHHHHHE EELLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT TTTToooooooooooooooooooooooo |