NONHSAT053628
Revision as of 22:17, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053628 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
910 nt |
Genomic location |
chr17-:39604435..39610307 |
Exon number |
7 |
Exons |
39604435..39604464,39604717..39604917,39605301..39605353,39605511..39605641,39607031..39607177,39608304..39608359,39610016..39610307 |
Genome context |
|
Sequence |
000001 CCTGCCAGCA GTCACTCTGC CTGTCCTCTG CCAGGGACCA GGAACATCCC TGCCAGTATG GGCACCTGTG GCTGGTTCAG 000080
000081 TGAAGACATC CTCAGCAGCA GTGGGAAAGG GATCATGCAG TTCTTAAGTG AGTGCCTGGC CAACTGCTTG CAGAAGTTGC 000160 000161 AGCAGTTGGA GCAGGAGAAT GAGAAGCAGG GGTGGTGCTG AGAGCCAGCA GTGGAGCAAA CGGCAGTGCC CTGACATATG 000240 000241 CTCCAATTAC TGCTCACACT TTGAGACCAT TAAGGAGCTC CAACAAAAAG TAAATGCTTG GTTGGCTGTC CAGGTGGACA 000320 000321 ATGTGAAAAT AGCTGTGACA ACTTTAGGGA GTTGGCTGGG CCCAGCCAAT GAGTGGAGAC CAACATAAAC AGCCTGCACA 000400 000401 GGCTCCTGGG TGATGTGGGT CTGCGCCAGG GAGAGCTGGA GGTGCAGTAA GAGTCCCTAA GGGAGGAGTT TCTGTGTTCG 000480 000481 AAAAATAACC GTGAGGACAA GCTCCGGATT GAGTTGGGGA CTGAGCCCAC TGCGGACCTG AGCAGTCAGA GGAGATGTGG 000560 000561 GGCCAGTATG AGGCCGTGGT GGAGACCAGC TGCCAGGATG TGGAGCAGTG GTTCCAAGCC CAGATGGTGA ACACCCTGGA 000640 000641 GGTGGAGCTT CAGGCTCAGC ACACGCTGGT GAGTCCCTCC TGTGTGAAGC TGAGGACCAC TACGGCATGG AGCTGGCCCA 000720 000721 GCTGCAGAGC CTCATCAGCA GTGTAGAAGA GCAGCTGTCC AAGAGTTAGG CTGACCTAGA GTGGCAGAGC CAGGAGTACC 000800 000801 AGGAGCAGCT GGATATCAGG GCCCAACTGG AGGGTGAGAT CACCATGTAC TGGAACCTTC TGGGGAACAA AGGCTGCAAG 000880 000881 TGCAAGAGGC CATGTAATCC ATGTACCACA |
Predicted Small Protein
Name | NONHSAT053628_smProtein_554:745 |
Length | 64 |
Molecular weight | 7133.962 |
Aromaticity | 0.0952380952381 |
Instability index | 45.0746031746 |
Isoelectric point | 4.69805908203 |
Runs | 8 |
Runs residual | 0.0179786200194 |
Runs probability | 0.0411367249602 |
Amino acid sequence | MWGQYEAVVETSCQDVEQWFQAQMVNTLEVELQAQHTLVSPSCVKLRTTTAWSWPSCRAS SAV |
Secondary structure | LLLEEEEEEELLHHHHHHHHHHHHHHHHHHHHHHHEEEELLLLEEEEEEEEEELLLLLLL LLL |
PRMN | - |
PiMo | - |