NONHSAT053939

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT053939

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

984 nt

Genomic location

chr17+:42402275..42403494

Exon number

2

Exons

42402275..42402604,42402841..42403494

Genome context

Sequence
000001 TCCCCGGCTC CGCCCACTCG CGTCTCCGCC CGGACCTGCG ACGGTCCCGC CCCCTTGACG GGGCCGCGCG GGCGAGTTCC 000080
000081 ATGCCTGTCC AGCGCTGAGA GCTGCCGGCC AACTTCGCGG TCTCCACGTC GCGCTTAACG TGGCAGCAGC ACGCACTTCC 000160
000161 AGCATCTTTT TTTAGACAGC ATCTTTTTCA gcctcgctct gtcgccgagg ctggagggca gtggcgcgat ctaggctcac 000240
000241 tgcagccttg acctcccggg ttcaagcgat cctcctgcct cagcctccgg agtagctggg accacaggcg cgcgccgcca 000320
000321 cgcccggctg GTGCGTGGCG GCGGCAGTGA GAATGAGTTC TTCGAGATCG CCGGGAGACC ACACAATAAC GACGAAGTTA 000400
000401 CTTGCCGGGC TACCCGCCGA GACTTGAAAA CTTCGCGGCG ACTTCTCTCG CCGGCCTTAG CATCGCCCCC ATTTTTCAGG 000480
000481 TTACAGGACA GGCCTGCAAC TGCAAAACGC TTTGTAAACC ACAGGGCCCC GCGCGGGTGT GCGCCACTGG GTTAGCTGAG 000560
000561 CTGCAGCCCG GGCCGGGCGG GCTGGGACGT GAGCAAGCCG GGGGAGACGG GAGAGCCATG GGGAGCCAGA TCCCACCTTC 000640
000641 GCGTGACCTT GGGCAAATCA CAACCTCGCC TAAGGCCCGG AATGACTCTG CGCGGAGAGG AAGAGCACTG AGTGCGGGAG 000720
000721 GGCATCGACG TTTTGGTGTT GGTTGCTCTC GTATCGTGAT TTCTTCTGAG TCTCAAAACT CTTTGCAGTA GGTTATTGTT 000800
000801 GAAATAGATT ACCACAggcc gggcgcggtg gctcacgcct gtaatccagc actttaggag gccgaggcgg gcggatcact 000880
000881 tgaagtcagg agttcgagac cagcctggcc aacatggtga aaccccgtct ctactaaaaa tacaaaagta gccgggcatg 000960
000961 atggctggcg cctgtaatcc cagc
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Predicted Small Protein

Name NONHSAT053939_smProtein_617:790
Length 58
Molecular weight 6052.6983
Aromaticity 0.0175438596491
Instability index 76.4964912281
Isoelectric point 11.7822875977
Runs 9
Runs residual 0.00394736842105
Runs probability 0.0396278631573
Amino acid sequence MGSQIPPSRDLGQITTSPKARNDSARRGRALSAGGHRRFGVGCSRIVISSESQNSLQ
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLHHHLLEEEELLLEEEEELLEEEEEEEEELLLLLL
PRMN -
PiMo -