NONHSAT054253
Revision as of 22:19, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054253 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2636 nt |
Genomic location |
chr17-:45127626..45177612 |
Exon number |
6 |
Exons |
45127626..45129033,45131239..45131582,45133826..45134123,45144780..45144863,45149837..45149925,45177201..45177612 |
Genome context |
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Sequence |
000001 CTGGGGGAGC AGCCGTTGGC TCTGGTGCCC CTGGGGGTGG GAGCACGAGT GGGCAAGGAT GATGGTGAGG CAGAGGAGGC 000080
000081 GGCCCCGAGG GAGCGCCCGG CTGAGAGGCG GGGGGCCGAG GGGCCCGGGG AGCGGGCGTC ACCGAGGGCC CTGGAAGCGG 000160 000161 CAGGGCTGGG GGAGAGGAGA CGCGTGTGTG GAGCATGGGG ACCCCAGCCC AGCTCCCACT TGCAGACCTG GGCCGCGGGC 000240 000241 TGCCGGCCGA GTGGCCGGGG GGCCTGGCTG CCCAGGAGGC GGGCCGGGGC CGCGGCCGGG GGCGCGGAGC GGAGTTAGGG 000320 000321 TCGCCAGGCC GAGCCGAGGT GGGACGGACC GACGCAGAGA GGAAGGGAAG CCACCTGGCC TGAAGATCCT GTCTCTAAGA 000400 000401 TCCCATTCTG AGGCTTCGAG GGTCTGGCTT GAGCAGCACA GACAGGGACG TGTCTAACCG GGATGACCAT GAGGTCTCAT 000480 000481 CGCAGTTTGC CACTAACCAG GGCAGCCGTT AGACAGCACA ACCGAACCCA ACACCGGGGC CCAACGGCAG GGGCTTGGGC 000560 000561 AGGAGCAAGG TCCGAGGGCT GCCAGTTAGG TCCACGCTGC TTTTATGAGC TGTAACACTC ACCGCGAAGA TCTGCAGCTT 000640 000641 CACTCCTGAG CCCAGCGAGA CCACGAGCCC ACCGGGAGGA ACAAACAACT CCAGACGCGC TGCCTTAAGA GCTGTAACAC 000720 000721 TTGCCGTGAA GGTCTGCAGC TTCACTCCTG AGCCAGCGAG ACCACGAACC CACCAGAAGG AAGAAACTCC GAACACATCT 000800 000801 CAACATCAGA ACGGACAGAC TCCAGACGCA CCACCTTAAG AGCTGTAACA CTCACCGCGA GGTTCCGCGG CTTCATTCTT 000880 000881 GAAACAGCAA TGAATCCTCC AATGTACCTG ACTCTCCCTT TGCGAAGAGC ATCTCCGTGG CAGAAATCTG AAAATGCCCC 000960 000961 TGGGGAGACA CATGCACAAG ACAGTGAGTG ATGCAGCCGT TTCCCACGTA TCTCACAATG TACTTCTCTG GTCTTATTAG 001040 001041 AACTAAATGA GTATCTCAGT CCATAATCAC AGGGAGAAGA ACCACCACAG ACCACATACC TGGGGTCTTG AAAATAATTC 001120 001121 CATGCATGTG GGACTTTCAG AAGCTCTCCA TGTCTGTCCA GAAGGGCCCC ACAATATACT GGGGGGACTT TGTATGTGGC 001200 001201 TCAGCATGGA GCAGGGGCAG GATGTTCAAT TTTGCTATTA TATCGACTTC TTAAAATAGT CTAGTGGGAT TAACTTGGTT 001280 001281 TCAATTCACA GAGATCTGGA AGCGAGGATC TTTTAAAAAT CCTGAAATAT ACACTGCAAT AAAAGAACAA AGCATACACC 001360 001361 TCAGCCTTAA ATGACTGAAG AAGTATGTCA AGTAGCAGCA GGTGGGAAAG TGGCTTTGGT TTTCAGTTTG TGAGCTCTGA 001440 001441 ATCCACACAG AAACAGGACT GCATTCTGAC AACCTGAATT AATTATTGTC CTTACCACAA TGAGGCAGAA AAGTATAATA 001520 001521 AAAATCATTA GTATTTCAGT CACAATTAAT GCCAAGATGA GTTTGTCAGT ATAGCCATAT CCTGGAACTT ATTTTGTGAG 001600 001601 CTAAAAAAAA CAAAAAAACA AAACAAAAAA AAACACACCA GAATGAGAGC TAACTATTCA AAACCCCAGT ATTCCAGGTG 001680 001681 AGTAGCTTAC AGGTTCTTTT TTATTTTTTT GAAAGAGGGT CTCACTCTGT TACCCAGGCT GGGGTACAGT GGTGCAATCA 001760 001761 CCGTTCACTA GACTCGACCT CCCTGGGCTC AGGTGACCCT CCCACCTCAG CCTCCCAAGT AGCTGGGACT ACAGGCACGT 001840 001841 GTCATCAACC CAGCTAATTT TTTTATTTTT TGTGGAGACA GGCTTTCACT ATGTTGGCCA AGCTGGTCTC AAACTCCTGA 001920 001921 CTTCAAGTAA TCCACCCACC TTGGCCTCCC AAAGTGCTGA GATTACAGGC ATGAGCTACC ACCCCTGGCC TACAGTTCAT 002000 002001 CTTGTGCCCT AATCTATATT TCACTCTCTA CATGAGCAAA GTGGGAGATC ACTGTCATGA CCAAAGTTAC ATGGCCAAGA 002080 002081 TAAGCTATGG CCTGGGAGTC CCAGATTCTT CTGTGTGGGC ACTTTCCTGG GATATGCTAA ATGATGGGAA ATCTGGGTCT 002160 002161 CATGTTTCTG TGTGGTCCTC ACCTCAAGCG ACTTCTCTTT CTGTTCACTC TGGGCTTCCG TGCTCTCATT AATGTAGTTC 002240 002241 TGAGTCTTCC ATTGGTCCGT ATCCCATTCT ATCTCAGATG CCTTTACTTC CTGCTGCCCA CTGAGAAGCT TCATCAGGTG 002320 002321 GCCTGTCCTG GAGATGAGCT TGGCACAGGT CACTTGCACA TGGGCCCCAG AGCAGTCCAT CTTCAAGGTC CGGATAACAT 002400 002401 GAGAAATGAG CCTTCTCACA TTGTTGGGGA TAAGGGACTG TAGCTGCTGG GTTAGCTGAA TTTCAAACTG AGCAATGGGT 002480 002481 AATTGAAGCT TTTGGGCTCG GGGGACAGGT CAGTGCCCAC GTTGTTGTAT TCCCATTTTG TCTCAGTTTG TTTAACAGTT 002560 002561 GGCCCTAAGT TGAATGCAGT CCCAGCGGAA TCTGCCTCAG GAGGATGATT GTAGTTTGTG TTTTCAGAGA TGGTGA |
Predicted Small Protein
Name | NONHSAT054253_smProtein_1046:1258 |
Length | 71 |
Molecular weight | 8111.1393 |
Aromaticity | 0.0857142857143 |
Instability index | 57.0114285714 |
Isoelectric point | 6.19366455078 |
Runs | 13 |
Runs residual | 0.0408769448373 |
Runs probability | 0.0371842430665 |
Amino acid sequence | MSISVHNHREKNHHRPHTWGLENNSMHVGLSEALHVCPEGPHNILGGLCMWLSMEQGQDV QFCYYIDFLK |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLEEELLLHHHEELLLLLLLHHHHHHHHEELLLLLLE EEEEEEEELL |
PRMN | - |
PiMo | - |