NONHSAT054309
Revision as of 22:20, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054309 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
574 nt |
Genomic location |
chr17-:45560357..45569925 |
Exon number |
4 |
Exons |
45560357..45560456,45567532..45567661,45568381..45568558,45569760..45569925 |
Genome context |
|
Sequence |
000001 GAAAATTCCA CTCCTGTGCT AGCTCCACCC TATGCGGCTT TTCTCCTACC CGACGCTCTT CACTCTCAGC TCCCTTCCCG 000080
000081 GCGGCCTTTG CGGGAACAAG ATGGCAGCCC TCATACCTCA AGGGTTCTCT TGTTTATCGA GGGTTTTGGG CTGGTGGTCT 000160 000161 CGGCAGCCAG TTCTGGTGAC TCAGTCCGCA GCTATAGTTC CAGTAAGAAC TAAAAAACGT TTCACATCTC CTATTTATCA 000240 000241 ACCTAAATTT AAAACAGAAA AGGAGTTTAT GCAACATGCC CGGAAAGCAG GATTGGTTAT TCCTCCAGAA AAATCGGACC 000320 000321 GTTCCATACA TCTGGCCTGT ACAGCTGGTA TATTTGATGC CTATGTTCCT CCTGAGGGTG ATGCACGCAT ATCATCTCTT 000400 000401 TCAAAGGAGA GATGATAGAG AGAACTGATA GAGAGAACTG AACGAATGAA GAAGACTATG GCATCACAAG TGTCAATCCG 000480 000481 GAGGATAAAA GACTATGATG CCAACTTTAA AATAAAGGAC TTCCCTGAAA AAGCTAAGGA TATCTTTATT GAAGCTCACC 000560 000561 TTTGTCTAAA TAAG |
Predicted Small Protein
Name | NONHSAT054309_smProtein_275:427 |
Length | 51 |
Molecular weight | 6292.3887 |
Aromaticity | 0.16 |
Instability index | 75.658 |
Isoelectric point | 9.81280517578 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.04485578015 |
Amino acid sequence | MPGKQDWLFLQKNRTVPYIWPVQLVYLMPMFLLRVMHAYHLFQRRDDREN |
Secondary structure | LLLLHHHHHHHHLLLLLEEELLHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |