NONHSAT054397
Revision as of 22:20, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054397 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1080 nt |
Genomic location |
chr17+:46537491..46543344 |
Exon number |
2 |
Exons |
46537491..46538034,46542809..46543344 |
Genome context |
|
Sequence |
000001 ATTTGTAAAG ACCACTTGTG AAGGAAACTC CATAACCTCC Ctgtggtgga gtgtattatt gctcagcaaa cattcattct 000080
000081 tctctatttc cctccgttgg gggagcaaac ttccccactc cattgatgat gggtctagcc atgtgacttg ttttagccaa 000160 000161 tggaatgtaa acagaggctt taactctact tgcttggtta agcttggtct cttgcacctc taccctttgc cacgagaaga 000240 000241 gcatgccctt gtcacttcgg cctgagtccc agaatgagaa gttacatgga gcagacctga acaagattca caacctgaac 000320 000321 agaatcactg cagccaatcc acaaacctgt gagcaaaaaa taaatgttat aaatttctga gattttagat tagttgttat 000400 000401 gcagcattat tttagtaaag ttgactgata cactccctca ggtacctgtt ccactgaact tttgctgcaa agttcttcat 000480 000481 tgtgtctaac ctaaatccgt catacattaa tgtaaAGATC TATCTCATTT GTGGTCCAAA TGAGAAAATT GTCTACATTC 000560 000561 CTGCctgggc atggtggctc atgcctgtaa tccagcactt tgggaggccg aggtgggcga gtcacttgag tcaggagttc 000640 000641 gagaccagcc tggccaacat ggtgaaaccc tgcctctact aaaaatacaa aaaattagct gagcatggtg gtgcatgact 000720 000721 gtaatcccag ctacttggga ggctgggtca ggagaatcgc tttaactggg aggtggaggt tgcagtgagc caagatcacg 000800 000801 ccactgcact ccagagtggg aaacagagca agactccacc tcaaaaagaa gaaggagaag gagaaggaga TTATCTACAT 000880 000881 TCCTGAGGAG GAGAAGTTGT ACTTAAACTA CCTTGATCCA ACTTCCAGCT TTACAATCAT TGCCCCCCAC CATGCATATA 000960 000961 TCATACATAT ATACCTGCTA GCATGAATAC CTGCATCATA TCTAGAATTA ATGGGAATAG TCATAGGGCC AATCTTTCTT 001040 001041 ATATCAAGCA AGCTGAACAA GGGTCCAAGG GATAAGGCCA |
Predicted Small Protein
Name | NONHSAT054397_smProtein_242:379 |
Length | 46 |
Molecular weight | 5111.7725 |
Aromaticity | 0.0222222222222 |
Instability index | 46.6333333333 |
Isoelectric point | 7.97979736328 |
Runs | 6 |
Runs residual | 0.0289141414141 |
Runs probability | 0.0479155626216 |
Amino acid sequence | MPLSLRPESQNEKLHGADLNKIHNLNRITAANPQTCEQKINVINF |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLLHHHHHEEELL |
PRMN | - |
PiMo | - |