NONHSAT054397

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT054397

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1080 nt

Genomic location

chr17+:46537491..46543344

Exon number

2

Exons

46537491..46538034,46542809..46543344

Genome context

Sequence
000001 ATTTGTAAAG ACCACTTGTG AAGGAAACTC CATAACCTCC Ctgtggtgga gtgtattatt gctcagcaaa cattcattct 000080
000081 tctctatttc cctccgttgg gggagcaaac ttccccactc cattgatgat gggtctagcc atgtgacttg ttttagccaa 000160
000161 tggaatgtaa acagaggctt taactctact tgcttggtta agcttggtct cttgcacctc taccctttgc cacgagaaga 000240
000241 gcatgccctt gtcacttcgg cctgagtccc agaatgagaa gttacatgga gcagacctga acaagattca caacctgaac 000320
000321 agaatcactg cagccaatcc acaaacctgt gagcaaaaaa taaatgttat aaatttctga gattttagat tagttgttat 000400
000401 gcagcattat tttagtaaag ttgactgata cactccctca ggtacctgtt ccactgaact tttgctgcaa agttcttcat 000480
000481 tgtgtctaac ctaaatccgt catacattaa tgtaaAGATC TATCTCATTT GTGGTCCAAA TGAGAAAATT GTCTACATTC 000560
000561 CTGCctgggc atggtggctc atgcctgtaa tccagcactt tgggaggccg aggtgggcga gtcacttgag tcaggagttc 000640
000641 gagaccagcc tggccaacat ggtgaaaccc tgcctctact aaaaatacaa aaaattagct gagcatggtg gtgcatgact 000720
000721 gtaatcccag ctacttggga ggctgggtca ggagaatcgc tttaactggg aggtggaggt tgcagtgagc caagatcacg 000800
000801 ccactgcact ccagagtggg aaacagagca agactccacc tcaaaaagaa gaaggagaag gagaaggaga TTATCTACAT 000880
000881 TCCTGAGGAG GAGAAGTTGT ACTTAAACTA CCTTGATCCA ACTTCCAGCT TTACAATCAT TGCCCCCCAC CATGCATATA 000960
000961 TCATACATAT ATACCTGCTA GCATGAATAC CTGCATCATA TCTAGAATTA ATGGGAATAG TCATAGGGCC AATCTTTCTT 001040
001041 ATATCAAGCA AGCTGAACAA GGGTCCAAGG GATAAGGCCA
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Predicted Small Protein

Name NONHSAT054397_smProtein_242:379
Length 46
Molecular weight 5111.7725
Aromaticity 0.0222222222222
Instability index 46.6333333333
Isoelectric point 7.97979736328
Runs 6
Runs residual 0.0289141414141
Runs probability 0.0479155626216
Amino acid sequence MPLSLRPESQNEKLHGADLNKIHNLNRITAANPQTCEQKINVINF
Secondary structure LLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLLHHHHHEEELL
PRMN -
PiMo -