NONHSAT055530
Revision as of 22:25, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055530 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
701 nt |
Genomic location |
chr17+:66255542..66270705 |
Exon number |
2 |
Exons |
66255542..66255567,66270031..66270705 |
Genome context |
|
Sequence |
000001 GTCAGGACCG CGACGGCAGC AGAGCATGTC TAGACAACTT CTGAGCCAAA GAGGAACACT TACCAGAGAT GATGCCGATG 000080
000081 GCGACGTACA TATGAGAAAC CTCTTGTGAG AAGGAGGCGG CCACCATCCC GGTGCTGACA AGTAGCCCCC CCAACATCAC 000160 000161 TACCAGACGG TGTCCGAAAC GATTGCTCAG GACTGTGGCG AGGGGAGCTG CCGGGAAAGA ACAAAACGAT ATTTTAACTC 000240 000241 ACAGAGGCTT CAGGGTTAGC TGCCATAAGA CTCCTTCCTC CACGTCTTGC ACATGGAGAG ATGATGTCGA ATATAAATAT 000320 000321 ggccgagcgc agtggctcat gcctgtaatc ccagcacttt gggaggttga ggacggagga tcgcttgagc ccaggagttc 000400 000401 aagactagcc cgggcaacat ggtgaaaccc cgtctctaca aaaaatacaa aaattagcca ggcatggtgg tgtgcacctg 000480 000481 tagtcccagc tacttggcag gcagagatgg gaggattgtt tgagcctggg aggcagacga tgcagtgagc caagattgca 000560 000561 ccactgcact ccatactggg tgacagagtg agaccctgtc tcaagaaaaa acaaaaCCAA ACCATAACAC ATTTCATGCA 000640 000641 AAGTCAGTGC AGGAATTATT TTACTATTTG TTCAAATTCA ACACGATTTG TCAGACTCCT G |
Predicted Small Protein
Name | NONHSAT055530_smProtein_338:424 |
Length | 29 |
Molecular weight | 3124.5277 |
Aromaticity | 0.0714285714286 |
Instability index | 86.075 |
Isoelectric point | 4.86785888672 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.0482070305601 |
Amino acid sequence | MPVIPALWEVEDGGSLEPRSSRLARATW |
Secondary structure | LLLLLLLLEELLLLLLLLLLHHHHHLLL |
PRMN | - |
PiMo | - |