NONHSAT056060
Revision as of 22:28, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056060 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1464 nt |
Genomic location |
chr17+:74565874..74567322 |
Exon number |
1 |
Exons |
74565874..74567322 |
Genome context |
|
Sequence |
000001 TTTAGAACCC TTAACCCATA AGGACCACCT GTAAAGCTGC TCTGTGGGGG GTGGGGAAGA TGTCCTCAGC GAGACGCCGA 000080
000081 GATAGGAGGG CTGGTTGTCT GGGCCACAGC AGTGGCGTCG ATTTTTAGGG ACCTGATCTC AGGGACAAGA AATTGTCTCA 000160 000161 GAACCCCCGG GAGGAGGTTC AGATGAGGGT CAGGTCGTGG CTCAAGAGAG CTGGACCCAG GCCTGCTGTG CAGGAAGGTG 000240 000241 GGAAAGAAGA CAAAGGGCCC ATTGTTTCCG CCTCTCAGGA CACTGGGCCT CGAGTCTGCT CTCCCGTTTC ATGGGCATGA 000320 000321 CCCTGGGAAG GATGCCCAGC AGGAGGAGTG GCCCAGACTG GCCCCAACTC TTGTTTCCAG CACAGTGTGC TCAGTGGGAC 000400 000401 AGCGGACCCA GCCCAGTCTG TGACCCGGAG CCGCTGGCGG CTGGGCTGGG CAGGGAGAGT GCAGCCCAAA GCCGAGAAGC 000480 000481 CAGACCTGCT CACCCCATTC AGAAGAGCTG CCTCTCCCAC CCCCAGCCCA CTGCCCCCAG AGGGCTACTG GGAACCCGGA 000560 000561 GGGTCACCTG GGCTTTCCAG GGGTAGACAA AAAGTAGAAT TTCCCAGTGC TGTTATGTGA ATAATTGGGG ATGATTGAAT 000640 000641 TCTTAGGGCT TTTCTTACTG CCCTTCACCC ACCTCCTCTT ACCCCATGAT GGGCCCTGGG AGCAAAAAGG AGATAACCAC 000720 000721 AGTGTCCCTT GCCCCTCTGC CACGCCCCAC ACCACCACGG CCTGGCTGCT CACCTGTCCC CTTTATCTAG GCCCTCAGGG 000800 000801 ACAGGCACGC CCAGAATGGC CGATCTCAGC ATCACATAGT CGCGGATGTC TGAGGGGATG AAGATATACT GCAGGTCCTG 000880 000881 TCAGAATAGA GACAATGAGC CCAGAGGGGA ACCAGGACAT GTTTAGCTCC TCAGTGTGGA CAGCCCTCCA CCCAACCTTG 000960 000961 CCCCCTGAGC CGACTGGAGA ATTTCCCTTA AATACCTTTC GTTCCCACCC AGAGGTGCTG TACTGGTTTC AGTGTAGGTC 001040 001041 CACAAATCCT CTAATGCTCC TTCAGGAGGT GGCACCCAAT TGCCATCCCC TGGAGTATGG GCTGGACTTA GCGACTCATG 001120 001121 CACAGGATTT TTCTGATAAA GAGGAAAGTG ATGGTGTGTG GCTTAGAGAC TAGGTCATAA AAGGCACTGT GGCTTCCTTT 001200 001201 ACGTTCTCAG ATCACTCACT CTGGATGAAG TTAGCTGCCA TGTCGTGAGG ACACTCAAAT AGCCTACAGA GGGCCCAAGT 001280 001281 GGCAAGGGCC CGTGAGACGC CATCTTGATG TCAGCTCCAG TCAAGCTTTT GGGTCTCTCA GATGATGCAG CCCATCATCT 001360 001361 GCACCTGGGC CAAAACCTCC CACTAAGCTC CCCACAAATT CCTGACCCAT TGAAACCACA AGATAGTCAA TATTTGTTGT 001440 001441 TTAAAGCCAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT056060_smProtein_182:319 |
Length | 46 |
Molecular weight | 4848.4853 |
Aromaticity | 0.0444444444444 |
Instability index | 48.9688888889 |
Isoelectric point | 10.2743530273 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0277083806495 |
Amino acid sequence | MRVRSWLKRAGPRPAVQEGGKEDKGPIVSASQDTGPRVCSPVSWA |
Secondary structure | LLLHHHHHHLLLLLLLLLLLLLLLLLEEEELLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |