NONHSAT056883
Revision as of 22:31, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056883 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
872 nt |
Genomic location |
chr18-:1159199..1160405 |
Exon number |
2 |
Exons |
1159199..1159766,1160102..1160405 |
Genome context |
|
Sequence |
000001 CACTCCCCTG TTCCCTCAAT CTAGTCCATG ACATTCCAGA AGAATATAGT TGTCATTATG GCTTCCTTAA GTTTTAATTA 000080
000081 CTGTAGTAGC TTTTAAATTA TGCCATGACA ACCCCGCTGT TGCATACCTG GATTTAGCAA AATGTGATGT GCGGGTGAGT 000160 000161 TGTTCAATGT ACAAGGTCAT TTTTAATAAA TTTTCACTAC AGTTAAGAAG ATAGTGTTCC TGATGTGGCT AATGGATAAG 000240 000241 CTCCCACTTT TACTGGCCAT GCTATGCAGA GACATGGTAA GTTTAGCTTT TAAAAGCCCT TGAAGAGAGA ATGTCTATCT 000320 000321 CTGATGCACA TAACTTTACT TTACTCCCTC TCTCAGTGTA GAAGAATTTT ATTTTACTGA CTTTGCCCTG GCTCCAATGA 000400 000401 AAGCTGCTGA TGTAGAATTT CAAACCAAGC CAGGGCATGC TAATGTTCTG AGGAATCCTG CTTCCAAAAG GTATAAACAA 000480 000481 AGAGAGATGG TCCCTCATGA ATGAAACAGG TAACTATACA CCACAAGAAA AGTCAATTGC TTTAGATATA CCATTGAAGT 000560 000561 ATGGAATGCA TTTGTTGCTT TTCAAGCCCA GAAATAAAAT GTCCAAAGAT AGAACAGATG GTTGTAGTAT TTGAAGCAGG 000640 000641 TTACGTAGCT GGGGGTGCTA TTGTCTCTCA CCTGCTGATT CTGTAGCATC TGTGGTGAAT AAAGGCAGTG CCACTCAGCT 000720 000721 TCCTCAGAGG ATTGGATGTA GGCTGTGGGA GGACCGGGCT GTGTGGGTAT CATCATAATT GGACCTCTGA CTGAGCTACA 000800 000801 GTGGTTTATC GAAAACTCCA GAAGGTCCAT CTCAGCTTCC ATGCATTTTG CCATCTGAAA TTGGAGTCTT TG |
Predicted Small Protein
Name | NONHSAT056883_smProtein_560:685 |
Length | 42 |
Molecular weight | 4429.3345 |
Aromaticity | 0.0731707317073 |
Instability index | 62.2902439024 |
Isoelectric point | 4.90252685547 |
Runs | 7 |
Runs residual | 0.00523716893611 |
Runs probability | 0.0410073939486 |
Amino acid sequence | MECICCFSSPEIKCPKIEQMVVVFEAGYVAGGAIVSHLLIL |
Secondary structure | LEEEEELLLLLLLLLLEEEEEEEEEELLHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo |