NONHSAT057022
Revision as of 22:32, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT057022 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1572 nt |
Genomic location |
chr18-:3983108..4248697 |
Exon number |
5 |
Exons |
3983108..3984259,3986120..3986216,4005116..4005201,4151180..4151287,4248569..4248697 |
Genome context |
|
Sequence |
000001 attggaagGT CGTTTttaag cttgagaatg gtaatagaca tccaggtgga gatgactagg cggcagatga gtctggagtt 000080
000081 cagggcagCT CTCCATCGAT ATTTCTAGCT CGCTTTGTCT ACAGTCATGA GCAGTTGAAC ATCAGATACC CAGAGTGACA 000160 000161 TCAGGTTAAA AAAAAGCCTG CAATTTGGAT CTTTTCCTGA CTCGGAAGCA AGGAAAATGG ACAATTGATA ATCAAAGGCT 000240 000241 AAATCTCTTC TGGGATCCAC TGAATGCCAC TAGAGGGTCT GCTCGAGAGA ATTCCTGATT GAATGACAAC GGCGCTAAGA 000320 000321 ACATCTTGAC GCAGACTATC CACCTGCATA AGAAACGGGC GATGGTGACA GAAGGAAAAA AAAGAACAAA GCCCTGCCGG 000400 000401 GTGCCCCAGT GGGAGAATTG gtcaccatga gaagggacca caaactggca gctgaaacaa cagaaattga tgtcctgaca 000480 000481 gttctggagg ctgaagtccg agatcaaggt gtaggcagAT TAAGAAAAAT GATTAAGATC CTGTGTGCTT TGTCTTAGGA 000560 000561 TTTTCTGATT ATTTTTTTCT CTTTCAAAAG ACTGCAAATT GGAGAAGTTT CAGAAGCTTT TCCATTCCGT GAGGATCTTT 000640 000641 TATTTTCTTT TATCTGTCCC CAAGAGCCTC TTTTTTTCTT CTTCCCATTA TTTCTGACCA GATAGGCTCT CTGTGCCTGT 000720 000721 TTTTTGTTGG GAAAGAAACC TCTACCACAA GTTGCAGTTT CATGTTCCCG GGGAGCATTT CAGTGGTAAC TCAGTCATTA 000800 000801 TAGGGGTGTT GTCTAAGAAC TTGCCTAGCT GCAATGGTCC TGCTGATTCT GTTATCTCTT TAAACAATGC GGTAGACGTT 000880 000881 AGAATGGGCT GATGATTTAT TTTCCCATTC TGGCAAGTTT TACAAGTGCT TCTTTCATAA TAGGAGAGTC TTTTTTAAAC 000960 000961 GGGGGTAATT TAGATTTGTT TGTTCTTGGA AGGAGGGTGG GGTATGAGGA ATGCCATAAT CTTACATTAT GGTATTAATC 001040 001041 ATTCTTTGTT CAGTTTGTTC TTTTACAGGT TTAATCTTGC ATTCAGTTTT GATAGAGAAC ATAAAGCATT TTTTTAACCT 001120 001121 AATGATGTCT CAAGTAGCGG TGGTACTTGA GATGGCTCAT TTTGTACATT ACTTCATGGA AAATAgattc ttggcacccc 001200 001201 caacaactag tgtgagctgg caagccacag atccttggag gttcagctgc ttcctctgtt aaaagcagat actgacacAT 001280 001281 AGTGAGTACA TCAGGCAAAT GAGCTTTATT TGGGGAATGT TGAATTTAGG GTCCTGTTAG AACATACAAA TAAATTTGTC 001360 001361 CTTATAGCAC TGTTTTGAGA TTATATAAGT ACCTGGCATA ATTAAGTAAT GGCAATCACT ATAATTATCA TTATTAATTC 001440 001441 AAGGTACCTT TTTCTTTTTC CTGATGGATA ACCCTTACAT TCTTACAAAT ACTAAATTAA TGAATAAGAA AAAATGTGCA 001520 001521 TATAATTTTG CTTTGAAATT TCAAATAAGG aaaaataaat ctaaaaaata aa |
Predicted Small Protein
Name | NONHSAT057022_smProtein_1028:1261 |
Length | 78 |
Molecular weight | 8913.5664 |
Aromaticity | 0.142857142857 |
Instability index | 43.3103896104 |
Isoelectric point | 6.37005615234 |
Runs | 9 |
Runs residual | 0.0191981931112 |
Runs probability | 0.0514337867279 |
Amino acid sequence | MVLIILCSVCSFTGLILHSVLIENIKHFFNLMMSQVAVVLEMAHFVHYFMENRFLAPPTT SVSWQATDPWRFSCFLC |
Secondary structure | LEEEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL LEELLLLLLLEEEEEEL |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | TTTTTTTTTTTTTTTTTTTTTiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooo ooooooooooooooooo |