NONHSAT058618
Revision as of 22:34, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058618 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3073 nt |
Genomic location |
chr18+:19995319..19999016 |
Exon number |
2 |
Exons |
19995319..19998116,19998742..19999016 |
Genome context |
|
Sequence |
000001 CAAAATACTA TCCTGGGAAT TATAGTTCCA TTAAGTTTCA ATCTGAACAA AAGTGTAATC ACTTAAGTAA CAGCAGTTAC 000080
000081 TTAAACTGAA AATGAGATCA GTCAAAATTA CTTTTGAAGA GGGCAAACAT GTTGTTAGGT TTCTTGCTGT CGTTCTGGAT 000160 000161 GTTCAGCAGC AGGCTCATTT GAAGTCGGAC TCAACCCTGA TGGAAACTCA TTCTACCTTC AGAATGTGGG GGCTGGGGGG 000240 000241 AAAAATGCAG GTCTTGGGGG ACGGTAAGGA AGAAAACCTC TCGGTAAATA GACATTTCTC ATTGCAAATG GAGCACGTGG 000320 000321 TGGACCTGGG ACATCCCTTG GAGAAAAATA ATCTGGAGAA GCTCCAAACA CGGTTCCTGG AGGAGGTGGG GGGAAAGGAG 000400 000401 GTCCTCTTCT TATGAACGGG CCCCTTGTAT CTACTGGAAA CAATAAACCT CTGATTGGAG CAAGAGGTGG AGGAACAAAG 000480 000481 CCAGGGCCAG TTGCTTCATT TTCAGCGGGG AGAGATGAAT CAGGCACCTT TAAATTACCA AGATTATCTT TGGTATCATT 000560 000561 TCTACTGGAT TCCATTTCTG AAGGCATTGA CCCATCCATT TTATCCAAAG AAGGCATATT AAAACTTCTG AGTTCTGCTG 000640 000641 GTCCAGAGAG TCTAGCACAA TTAGAATAAA ATCTGTCTTG CCTTTGTGGA GGGAGAGCTG AATCAGGATA TGATTGTCCT 000720 000721 GGTGGAGGAA ACATCATCCT ATAGTCCTGT TCCCACGGAG GTGCCAGGGG CCCAGCGTCA GAAGGAGCCC TGTGAGGATC 000800 000801 AGTTAACCTA TCACAGCTTG ATTCTCCTCT TTCTTTGGTA ATCTGATGGT CCGGAGGATT CCCTGGGCCT CTGGAGCCTC 000880 000881 TTCCTCCTCC CCGTGGAAGC AAAGGTGAGA GTCTGAGAGG ACCTTCCAAC AAAGTTGGAG GATAGAGAGA AGCTCTCGTT 000960 000961 TCAGATGAAG GCCAACCCAA TGGTGAGGGA CCATATGGGG AATGCTGTCT GCCAAATGCT GTATTTGGAA CATCAAGTCC 001040 001041 ATAAGGATCT TTTTCTAAAA GTTTTATTTT AAACTCTATT TCAGTTAATT TTTGTCTGTT GTGAGCATTT TCTTTCCTTA 001120 001121 AATCATTGAG GTTTCTTTCA GCAGTCCAAG CTGCCGACCA ATTATCATGT GCTTTTTTCT CATGGAGAAT AATCTTCTTT 001200 001201 TGATAAAAAT GAATAGTTTT CTCAAATTCT TTAAGATCTT TGGCTCGCTT TCGGTAGGTC TCCAGCTCTT CAGTGGCATG 001280 001281 GCTGATCATT TCGTCTACTT TAGAAAGTTT CTCTTCTTTC TCTAACCGGC ATTTTTCCTC TACTATTAAT TTCCTGTAGA 001360 001361 GTTTCATTTC ATTTTCTTGA TATAATTCAG TCATTACTTT AAGTTTCTGC TGAAGCTTCT GATTCTCACT TTCAAAATGT 001440 001441 GTGTTTTCTG ACTGCAAAGA TGCTTGTTCA GTCTGAAGAT TTTTAATATG CTCTGTAAGC TCTTCCTTTG TTTTATCAAC 001520 001521 TTCAGATAAT TGAATATAAA TTTGGTTTCT TTCTCCTTCT AAGGTTTTTA AGGAAGCATT TAACTTAGCA GCATGAATCA 001600 001601 GTTTCTTCAA AGCTCCTTTT GGAGGATTAT CTAAGTAAGC ACCATCTTCC GATTCACTGT TCATTTCTAA TTCCAAGTTA 001680 001681 TCATCATCCG TTACATCTTC TTCAAGCATA GCAACCCCAT CTTTCATCTT TAGCAAGCGT TCAGTCAGAG TCTTGATGTG 001760 001761 ATTTTCTTTA TCATTTAGAA CTTGTTCTGC ATGTACTTTG GAGTCTTCAA ATGTTCTTTT CTGTTTAATA AGTTCACTCA 001840 001841 CTTGTTCTTT CCATACTTCA GCTTCTTGCA AAAGCTGTTT CTGGCTTTCC TGAAGTTCAG AATTTTCTTT CCAAGCATCT 001920 001921 TGTATTTCTA TCTCCAACCG TTCTTCATTC GCTTGAAATC TCTTGAAGGT CATTTTGGCT TCAGCTACTT GTGATTTGAG 002000 002001 GGATTTTGAC TCATCTTCTA GCGACTGTAT CCTTTTGGAA ATATCCGCCA TCAATTCATT TTGTTCAGAA TGTTTAGATT 002080 002081 TCTCTTCTTT TAACTCTTTT TCTAGACAGA GTATTTCATG CACAAGTTCA GAATTGAACC TGTTCAGCTT TTCGCAGGTT 002160 002161 GCCTCCAAAC TTTGTGCTTC TGTTGCCTCC TTCTCAAAGC TGGCATTCTT TAAAGATGAC TCTACTTCAT AGCCTTCATA 002240 002241 CTCTTTTTGA ACAAGGCTAA ATTTTTCAAG TAGTTTACAT TTTTCTTCAA TTAGTCCAGA AAGTGCCACA GCAAACTTTT 002320 002321 TCTCTCTTCT CACATAAAGC CGACTCGTAA CTGATCTAAA ACTTCTCCAC AAGAAGAGAA CAGCAAAAAA TCCAGCAACA 002400 002401 GCTGCACGTA TCACCAATTC CCATGGAAAA CCATAAGGAT GAGAATCGGG TCTCATACCT TCAGTCAGTG CTGCCACAAC 002480 002481 CCTGCGTAGC AACTCCAGGA CCAGCCCCAG GTATGGCTGA GGGTTAGCCC TAGGCTCCTC CGTAGCGCCA AGGCTGCTCT 002560 002561 GGCGGTTGCT GCAGTAACCT CGGCCACAAC AAACGCTGGA GAAGACGCAG CATTCCGTTT GGAACCTGAA TCCCTAACGG 002640 002641 GCAACCGGAG CGTACCACTG CGGAGCCGGC TGCGGGGGGA GTTAGGGGAC GCGGGCACCC GTAGGCCTCA CAGACCCACA 002720 002721 CTGCCCACCC CGGTACCTTT GTTACACTTT ACATCCTGAG GAAGCGCTAA AACCTATATT TTAAAACAGT ACCACATGTC 002800 002801 ATCATCTCCC GCCCATGCAC ATATCTTCAA CTCATCTGGA AAGCTTGCTC CTGCAGCAAT GGGTATGCCC ACTAGGTTAT 002880 002881 AAATCAGCGC CAGGACCAGT TTGATGCATA TCCTCTGGAC AGTCATCTTG GAAATATGAA TGCTAGCCAC CACATCCAGC 002960 002961 AAATCATTTT TGATGAGGAT GACGTTGGCT GCCTCGATGA CCACATCCGT GCCAGTGCCA GTGGCAATGC CCAAGTCTGC 003040 003041 CTGGGCCAAG GCCAGGGAAT CATTGACCCC GTC |
Predicted Small Protein
Name | NONHSAT058618_smProtein_1790:1993 |
Length | 68 |
Molecular weight | 8344.9141 |
Aromaticity | 0.358208955224 |
Instability index | 41.1717910448 |
Isoelectric point | 9.84429931641 |
Runs | 8 |
Runs residual | 0.0239118543409 |
Runs probability | 0.0325030913266 |
Amino acid sequence | MYFGVFKCSFLFNKFTHLFFPYFSFLQKLFLAFLKFRIFFPSILYFYLQPFFIRLKSLEG HFGFSYL |
Secondary structure | LEEEEEEEHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHL LLLLLLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHH HHHLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTT TTTiiii |