NONHSAT059202
Revision as of 22:37, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059202 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
952 nt |
Genomic location |
chr18+:46386253..46388726 |
Exon number |
3 |
Exons |
46386253..46386800,46387588..46387663,46388399..46388726 |
Genome context |
|
Sequence |
000001 GTGAGGGATC TCATCGCTGT GACTCCTCGG AGACCTTGGC AGCCTCGCAC GCCGGGGCAC CGCTTGGGTC AGAAAGGACC 000080
000081 TCGGAAGGCT GAAAAAGTGG GTCGGAGACG GGCTCGCATT GTTCCCGCAT GCTGTCAGCC GCAGTCGCCA ACTGGCAGCA 000160 000161 GGCGACGTGT AGCAGATGTC CGGGAGGACA AAGGCAGGCA CGGTCCCCAC CAGCCGCCCG TAATTGACGG CCTTTGTCAG 000240 000241 CCATGGCAGA GCTGACGCTC CACCTCCCAC CTCCAAGTCC TCCTCACTGC AGCCCCCACA GCCTCAGGCC TAGGGGGTCA 000320 000321 GGCGCAGCGG GGGAGATGGA GTTTGCAGTT CCACTTGCAC TCTTTTGTTT ATTGTGTTTT ATTTTTCAAA AGTCGGTTGC 000400 000401 TTTGAAGTCT CTTTGGCCAA TGAAAATGCC CGTGATGTGA TCACACAGTC AGCACTGTTG AGGACCCCCG GATTAGTGGG 000480 000481 AGATCAAACC CAGCTCCCCT CTAGAAGAAG GATTCGAGCC ACAGACAGCT TGCCAGTAGC CAATTAGGGT GTGGAGCCTT 000560 000561 TGCCTGTCTC TAAAAAGAGC CTGTTGGCGA CAAGGTGTAG GGGGCACAAG TTTACCTGAA ACAGATATGG AAGGAAAACG 000640 000641 TTAAGACTAT TTTTTTTTTA AAGAAACAAC AGTCAAGCCT AAAATTTGAG ACCCCGAGGC AGCTTCCCGA GGGAGACTGC 000720 000721 TCAGACAGGA ACTGCAGGAC AGAAGTGGAT GCCCCACAGA CCCTGGCCCC CTCCCCAAGT CCATCCCCTC TCTGTGGCAT 000800 000801 GAGGAAGGCC GCGTCCGAGT TGACCTCTGA ATGTATGTGA TGAGAGGCAG AGCTGGATAT TGCATTTCTA AGGCTTGCAT 000880 000881 TGCTTTCCCC TCGCCCGCGG TTCTTGGCGC ATGGAAGAGG CGGTCCAGCC ATCTGATGTT GATCCTGTCT CA |
Predicted Small Protein
Name | NONHSAT059202_smProtein_242:439 |
Length | 66 |
Molecular weight | 7116.5741 |
Aromaticity | 0.0769230769231 |
Instability index | 62.9153846154 |
Isoelectric point | 8.63507080078 |
Runs | 5 |
Runs residual | 0.0733653846154 |
Runs probability | 0.0336866278042 |
Amino acid sequence | MAELTLHLPPPSPPHCSPHSLRPRGSGAAGEMEFAVPLALFCLLCFIFQKSVALKSLWPM KMPVM |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL LLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL LLLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii iiiii |