NONHSAT059717
Revision as of 22:39, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059717 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3191 nt |
Genomic location |
chr18-:65149028..65152203 |
Exon number |
1 |
Exons |
65149028..65152203 |
Genome context |
|
Sequence |
000001 ATATTATTTA AAAATAAAAT CGAACAAATA CCTATGCATA CATTTGAGGA CAGACTTAAG TGAAGGACAA TAGCCCTCAA 000080
000081 AAATAAGCTT CTAGTTGTGA TTCTGTCTTC TCTTTATAAC ATGACTAGCA TTTATTTTTT TCAGCAGAAT AATCACACTA 000160 000161 TGAATTATTT CCTATTGAAA AATCTCCTTT TCCTAAAACT TCATTTGAAC ACCATTGTTT CTACATACTT CTCTTTGTTT 000240 000241 TCATGCAACT CTTCTTTAGA GGCAATGTGG ACTTTAGATC TCTGGGAAAG GGCATACCGG AGGATTTTAC TGGCCTTTGT 000320 000321 GACAGATAAG TGTTGTCAGA ATATTTGGTG GCTGTGTGTC AGGGGCTTGG GCCTCTCTGT TATGCAATTG TGTCACTCTG 000400 000401 AGGCTCTCTA CTTGAGGGAA TGTTTGTTTC CATTTTTAAT CAACCTGGGA CAAGGCGAAT CCTGCCTCTC AAAGGGTTGT 000480 000481 AGAAAATACT TCCTTGGTCT GTTGGGCCAT GGAGTACCTC TGAAGATGTC TGCACATTCC TTAAGCAGCT GGCTCTGAGG 000560 000561 AAGGTCTCAG CTTTAAGACA CTGAGGCTGG TTTCCTTTTC TTTTCCCACA AACCTTCAGT ATAATCTTGT TAAAGTTCTG 000640 000641 TCCAGGGTAC CGTTGTGCTT TGAGGAACGA AGGGGGACCT GCCTGTGTTC CAAAGGTGGA GTAGTCGTGT GCTCTGCCTG 000720 000721 AAGATGAAGC AGGGGTGTCT CAGTGGTCAG CATGCGACAG ACAGTGTCCC TAGCACAGCG GCAATCCCTA AAGTGGTCAG 000800 000801 CAGCGGATGC AGCACTGAGG CAGTCAGGTG AAGATGCAGG CTAGGAAGGG GGTGAGGGAT GAGTAAGGAG AACACATGAA 000880 000881 ACCACTGTCA GGAATTTGAG GAATTTACTG GGAGTAATTT AGGGTACTTT TGCCACCATA TCCAAATACA GCCAATAATA 000960 000961 TGGATATTAA AATGGAGTGC AATATTACTG TCATTTTCAT TTTAGAAATG TGGAAATGGA GGCATCAGGC ACATTACTTG 001040 001041 GAGTTGCCTA CTACATACTC CAAATTTCTT TAAAACCTCA TTGTAAGATG AAGTAAATGT CATACACTAT TCCATAATAT 001120 001121 AGACAGCTGC ATTTTAATAG TAAGCTATTA TGATTAATAT CAACATGGTC ATGAAACAAT TTCTCCTCAA ACATTTTTAG 001200 001201 TTAAACTTGA GAAGCTGAAA AAGGAAGGCT GCTTCTTGTG TGGCTTTCTA TGCTGCCTGC TTCCCTTTCA AACATAGATT 001280 001281 CAAACTGCTG CCTACCTACT TGGAAAGTGT TTAGTGTAGT TTTTTTTGTT TCTTCAAAGA AAAGGGAAGG CAAAAGGAAA 001360 001361 AGAGAAAAGG GAAAGAAATC CAGAGAAAAG AATGGGGGGA ACTTAGCTTC TCAGGGGTAA AGACAGACAG ACTTCAATCC 001440 001441 CAACATCAGG GAGAGTAGGG GAAACCAACT TGGCCCAGAG CTGTCACTCT CGCTCTCCTC TTGCTTGAAC AGCTGCCAAT 001520 001521 ACCCAGAGTC AGCCTGTCCT GTTGCCCACT GAGCTTCAGG CTTGCAGAGA AATACTCACA TCTGTGCCAA AAACCTTTTG 001600 001601 CCCAGCTCTG ACACTTCCGC TTTGAATCCC ATGGCTCTTC TTGATTGTAC CACTGAAGGT CCAGGACACA AAAAGCCCTC 001680 001681 AGGTCATTTG ATTTAGGATT TGAACAATGG AGAGATGATC ATGATCAGAA GAAAAATTCT TTATACTTCA CAAAGGCAGA 001760 001761 AATAAAAATC CAGTTTGAAA TTGACTTTTG AGCCTGGAGA ATAATGGGAA ACTTCACCCA TGTTAACTTG TCTTTTGCAA 001840 001841 ACAAAGTGTC TTTCTGTGTT AGAATTTTCA AGAGCCTAAT TCTGCTAATC ATAATGTATT TGCACATGCA ATTAAAATTT 001920 001921 CCAAATTTTT CTTTTTTAAG GAACTACTCC AAAAAGCTTT CCTTTTCTTT GAGAGTACAC CACTGAGTTT TGTAAAGTAC 002000 002001 CAGACTTTTG CTTGAGTTCC ATAAAATGTT GTCTGAGCTT CTACACAGCA TGACAGATGA TCAAAACCAC TTTTTCCCTG 002080 002081 GATTTTGTGT CTGTTCAGTT AGTTATCACT CCTAGCTTAC TGCCGTCTAC AAATCTTAAA AACATGCCCT TTATCTCTCT 002160 002161 TCCTCCTGGT TATTAATTAA AATTTTAACA AGACAGGGCT AAGAGCCAAC CCACTATAGG GCTTTATTAA AGACTACTGT 002240 002241 ACTTTGCAGT TTGATGTTTA TTAACATTCT TTGGGCACCT AGCTACAATA TAACTCAATT TTCTGTGAAA AACTATTAAT 002320 002321 CATCCTATTT TTTCCTTGTC TTTAATATGA GATAAATTTT ATACCACTGT TTCTCAAACC ATCTGTTGTG AGGGACAGTT 002400 002401 TTGCTTTTTA ATTTCCAATT GTCAGAGACC AATACTTTTG TAAAATATAA TTAAAAACAA ACATAAAAAT AAACTTATTA 002480 002481 GAAAAATGAA ATAAAAGAGA AATGAAATAA GAATAATTTT ATTATTAGAT TTAACAGATC AAATATTATT TCAATACTCA 002560 002561 GATCAAATGT GCAATAAGAC AGGGTTGCAA AAAATGCACA CTTTTTTTAT TAAAATCATT TATATAAGTA ATTTATATAA 002640 002641 AAATAATATT ACAGTTGCAA CTTTCTGTTG TTTCTCAACT ATGACCAAAC AGAGGTTACA AGTAAAGTAG CAATCCCAAT 002720 002721 ACTAAACTGC TATATGTGCA TTTTGAATCA ATCATGTGTA TGTCAATGAA GTTTTTAATG TGACAGATTT GCATTTTGGT 002800 002801 TGTTAATTTA TATAATCTAG GTTGGATAAA TGACAATGCC AATCATAGGG GATAATGTTG ATCCTAAATG TTAGTGTGTT 002880 002881 GATTTCATAA CACTCAATGG AGAAGCCAGT CTCAGAGAGG CATGGTGCTA GACTGGAAGA CAAGAATTTG AAATAATTAC 002960 002961 AGTAAGCTGA TGGAATTCAC TTTTATCTAT TTTTATAAAG CAAGTGATTT TGTATTTTTA AAATTTATCT TCAATTCTTC 003040 003041 ATCAATAGCT ACTTTTAATC ATTAACCTTA TAAATTTAAT TATATTTCAA TTATATTTTA ATAGAAAGAA TGGATTTCAT 003120 003121 GTTTTTTCTG GTGTGGATCT TTGATAAGAA AATAAAATTC AAAATATTCT GTCAAAAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT059717_smProtein_959:1072 |
Length | 38 |
Molecular weight | 4630.4763 |
Aromaticity | 0.162162162162 |
Instability index | 65.1945945946 |
Isoelectric point | 6.69866943359 |
Runs | 8 |
Runs residual | 0.03644929333 |
Runs probability | 0.00280427486309 |
Amino acid sequence | MDIKMECNITVIFILEMWKWRHQAHYLELPTTYSKFL |
Secondary structure | LLEEEELLEEHHHHHHHHHHHHHHHHHHLLLHHHLLL |
PRMN | - |
PiMo | - |