NONHSAT059838

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT059838

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6150 nt

Genomic location

chr18+:71015791..71021940

Exon number

1

Exons

71015791..71021940

Genome context

Sequence
000001 GACATCAATG AAATATGAAG AAAGGTAAGA GAAAAGTTTC TGGGGAAACT AGAGACTCTG TTGTCAGAGA GCACAAAGCT 000080
000081 GATAAAATGT CTAGTACTTC CAAGTTGCCA CTGTTAGAAG GCTGAGGTTA CCCTGAGAGA ATCACAGTAC TTGGAGCACT 000160
000161 GCTTTAGTAG TCAATAGTAC CTCGTTTACC TGCTTCCTGA TGCAAAGACC ACATCTTGCC ATCAGTTCAT ACACAGTCAC 000240
000241 TTCTGGCTTT TCCATGATCC TGAACACCAG CAAGCCCAGA GGATGCACTG GAAGTAAATA CCAACTAAGA TGAGTGATCC 000320
000321 AGAGTGTAGA GGAAAGGGGA GGAAAACCAC CACTAAGCAA ACTCCCCCTA GGGAAACTAG TAGAAGTAAT CAAATCACAG 000400
000401 AGGTAGTTAG ACTGTATTAA TGTTTACCAT ATGCATAATT ATGACCACCT CAATGAACAT AAACATTCAT ATAGGTCAAT 000480
000481 TTTAAATGTC TAATTTCATA GTTAGTGACG TTGTTTCATT TTTCTCAGAT CGGTGACCTG GGCTCCTTAT GTGCCTGAAA 000560
000561 GAGTTTGAGT TTCCTGTTAA CTCCAAATCA ACAGTATTTT CAACAAGAAA TGTGCAATTG AAATCAAGTG CTGTTTAAGT 000640
000641 GCAGCTAGGA TTTCCACAGG AAGACACTTG CAGTGAACAG AGTTATGGAG CAGCAAAAAC ACAGATCTAT TTGGAAAAAG 000720
000721 AGAAAACATA TGCGTTGTAT TTTGCTTCAA TTATAAAATA CCATCCTCTC AAAGGTGGTT CTAAATTACA AAGGACTTTG 000800
000801 ATTTCTAGGT AGATTCTGGG TAGAGACTTC CTTTCATATT GAGGCATTAA TGACACCttt taacctggga agcaatatga 000880
000881 ctggagttgt actttgagaa gattaatcag gtttggttgc agaatgaaag agaagatgaa gtcaagagat tggtttagag 000960
000961 gctctagcag AAGCTTAGTC ATATTTCAAA ATGATCAAAT ATCAAGAAAA ATTCTGAGCT GCATAACTTG TATAAAGTAA 001040
001041 TTTTCAGTGA TTTTTTTCAT GGTTATGATA AAAGAACTGG ATTAGCAGAA ACTTTTACCC TGAATCAAGA TTTAATTTTT 001120
001121 CTTTGAGCTC ATCTTAAGGA TATCGGAACA TAGGGAGCAA ACGATGGTGT GGCTGCCTCA GTGCTTGATT TTTAACGGTT 001200
001201 TTGAAGAGAA TAGTTACATT TCTTCTCCTA GTAAGAACTA ATAAATACAT TAACAGAAAT GAATTCCCTA TCCCTTTGTA 001280
001281 CACTGGTCTA TTTCTTCAAA ACATTAAATA CTATTGATAA GATATCACCT TTTATAATTT GTGTTCATTA CAGTTCTCTT 001360
001361 GTCATGAAAT GCAAATGAAA TGTAGTATAT ACTAACAGCT TTTACAGAAA GACTAATCCT AAGAGAATCa tatttttaaa 001440
001441 tttgaattta taataattat GTTGTACATT ATGGTTTCGA TATATGTATA TGTTGTGGGA TGAGACACGC TCTTATTTTT 001520
001521 TAATTTCATT TATTCATTTT TCAGTTTACA TTattgtccc ctttgaagta aaatttaata ggatgttctc aaattttatt 001600
001601 gagggttgac agacggccaa ggaaaatgtt tatttttatt ttttcatcaa aatacaactt gcattttgat taacctttat 001680
001681 attctaaaaa gaactctttc agaatgcagt cagaaagggc aaataagtct ctttcataga aatgataaaa tttccttcaa 001760
001761 cagacaaaga gatcgatggg aaagtcatgt ttttgcattt gtcacagctg ctgataaact aagaacaaat CAAGTGAGAC 001840
001841 AAGGGAGGAG CCATTTTACA TATAATTCCT GATAAGATTA TCTATTTCAG CCTCCCTCTC TTCCCTTCCT TTATGGAATT 001920
001921 TTGCATTCTC TTACTGCCTT TAATGTTACC GTCCTGTTGC ATATGTATTT TTACCATGCA ATAACTCATA TTTATTTTAA 002000
002001 AGAACTCTAG ACTTGAAGTC AGTGGATCAC AAGGAATGAG GGGGTTTGGA TATGAGACCT AAATATAATG TAAAGCTTAT 002080
002081 TATGATCTTA CGGTGGGTAG AGAGATGGAG CTTAAAAGGA TCATAGGAAA GAAGTATTTG AACTACATTG CTGAAAGTAG 002160
002161 CAAAAATATA AATCATTTAT ATATGGAAAT TTGAGTAATA CATTAAATAC ATGGTAAATT ATTTGGGAAG GTTATGTAGC 002240
002241 TCACATTTTA TTATACCTTC TCTATCCTAT GCAGTTTAAT ACACACGATG GGCCCTCCAA GTTAAATAAC CCAATGAAAC 002320
002321 GGGAACATGC TCTTTTGTAT TGAAGTTAAA TTTAGTGAAG GCCACCCACT TTCAATAACA TTGAAGCACA TATATTCTGT 002400
002401 TGTTGCTGTC CATTAATATT TATTTTTCCC CGTACAATGA AGTATGAAGC TATCGAGATA GGTTTCATAA ATGACCTATG 002480
002481 AACTGTTATT TCAAAGCACA CAAACTATGT AAATTGGGAG TAGTAATTAT ATCCTTTACA AATAAATTCC TGTGTCCTTC 002560
002561 ATTATCAATT TAATGGAGTA TTCTTTAGAG CTCAAAAGGA AAATAAATAA TCATGGTGTT TAATATTGGA AATTCTAAAC 002640
002641 TTTATCTGAA TAAAAGAGTG AAACCACAAA TGCTAATATT TTTATCTTAT TAAAAGCTAA TTAAGAAATC CCTACTGGAA 002720
002721 ACTTTACATC TAAATGCCTG GTTCTTTGGA GAGACATCTG AGTCAGGCTG AATTAAGAAA TGAAGCATAA TATTTATAAC 002800
002801 CCTAAGAGCT ATGCAATGGC TCTTAAATTT GTGATTAACA GAAAATATAA CAATTCTCTA AGGGGAAGAA ATCATTCAAA 002880
002881 ACCAATTTTC AATTCCCTAA ACATGTTATT TTTTAAAGAC CCAGTGAGCC ATGTTGAATA TTCAAATTAA TTAATAATTA 002960
002961 TCATAAAGTG TACTGCTACG ATGCGTTCTG AGATAATTCA AAGAGGAGTT TTACCTTGCA GCTGGAATAA AATTTCCATT 003040
003041 CATTTACCTC CTAGATGTGT AAACAACATT ATTAAGTCAA TTTATCAAAT GAATAAATAC TATCATGTGT GACAGCATGG 003120
003121 TTAATGGAGA AATTAAATAT AAAGGGTAAA ATTGTGCTTT AAACATGGAA ACTGCATTCC CTTTGGACTG GTAAAATTGT 003200
003201 AGCCTGGTGG TCAAGAAATA CAAATCTAGA AAGAGGATGA CAGAGGcttt aactctattg cccccagatt ttgacttttg 003280
003281 gttgtctcaa tttatataat tttctgttgc ctatcactta acacgttgct gtagctatta ttgtttttga tagttttgcc 003360
003361 ttttaggctt cacactagtt ataagtggat tgcacttcac aattacagtg ttgaggtatt ctggggttgt cttcatttta 003440
003441 cctatgagtt ttataccttt gaatgttttc ttgtttcacg ttagtgtctt tttctctcag agtgaagcat tttcttttgt 003520
003521 atttcttata tgactagtca ggtggtggtg aattattata acttttgttt ggaaaacttt taactatgtt ttcagtttag 003600
003601 aaatatattt ctcagtttga ggatttccat ttgacattta attatttcaa tctcttcatt aaatatctct gataaatttc 003680
003681 tgaatcactt ttttttgcat tatcttggag atcactgagt ttcttgaaaa ttactctttt gaattattga tcagagagct 003760
003761 catgtgtcac tgtctcacta tggtggtcac tggttccttg ccctgtccat ttggggaggt cctggttccc tgtttgctgt 003840
003841 tgtttcttat ggatacatgc ctgggtcttt tcatcgtagg agtattcact ctagtctgtg gattgtttgg gggttttatt 003920
003921 ggctgtgttt gcttagagaa tcttcataat ttacctattg aaattcttac attttttcac cagtgccttt gtttcagcac 004000
004001 tagatgatgc ttaaagccca agtttgcctc agctccagca agtgatcaga gagcactgct gggccagaat gggggaggtc 004080
004081 cccaagggga tatcccattt cactggaagg ccttgcaagg gattcgtgcc cagaggacca tggaacacac ctcctgcaga 004160
004161 gtgttgctgc tgaacaacca cactaatttg gtatctcctt tggctgagtg acagagcaga gtttccagaa ctgtggatga 004240
004241 tggttgcacc tccctctttg tctctagatc tgtctgctgt caggcactca gaatatttcc atgggtggag acattgtcag 004320
004321 gtctccctgc caaagaatcc agaatgctga ggatgctgct tgtcatcata tctcactttt tgcagcatgg aaaccatgag 004400
004401 ttgcaggaag ttttctgcgt gcttggtgcc aggcagactg gggtgagagg tgtcatgggt ataaaaacag ggttctctga 004480
004481 ctgtttgcct gctgatttta tttctccatg accttgggaa ttaacttata tttgagttat gggttattat tggtgaggat 004560
004561 ctcagtgccg tacttttggc tttggttttc tggagtaggg gacagtgaag ccagtttgtg tccatgtcac cacttcagaa 004640
004641 ctggaaatct GTATTGTACT CTTTAAATAG ACATATGATA AGAATATTTC ATATATTTCA TATCTATGTT TTCCCAATCT 004720
004721 GACTCTAGTT TTGTATTAAT ATTGGTATTT ACAACGTAAT GACAACACTt atgtgtctat cacagttcta attactttat 004800
004801 atgatttaat gcttataata tatgttataa gtagtgatat tatctccata ctactgataa gaaaaatgaa gcatatgata 004880
004881 tttaactgtc taccgttaaa ttgtctacaa attgcctaca tagctaataa ttacgcaagt tgggatttaa tcccaggcta 004960
004961 caagtctcca taatgtatat ccttaatcac tgtgACGCTC AGGTTCATAA ATGGTCCTGC TTCTTTATAG TCGTCACTGT 005040
005041 TTGACACATG GCTTAATCCA TCCAGCCTGA CAATCACCCG CTGCAGTGGT CTCAAATCTA TGATTAGAAT ATCCTATTAA 005120
005121 AGTAATGTGT AAAGGTAAAC TTATTTCAGA CAGCATTATT TAAATTACTA AACCTAATTT ACTAATCACT AGTCTAAAAT 005200
005201 CATCTGTAAA ATATTTTATT AACCTTTATA ATAGCTATTT CCCTTAGGAT ATGACAAGCA TCTCCAATCC CATTATGTAT 005280
005281 ATTGTGAACT AAAGAACAGA AAACTTGAGC TATTGTCTAT ATTTTTAGAG ACCAGGTGTT AAAGGAGGAT TTAGAAGCAA 005360
005361 ATATTCTAAG TGACATCTCC ATGATTAGCT TGAAATCCTG CACTGCCTCC TGTACTTATC AAAAATGTTT CTAATACCCT 005440
005441 AAGACTTTAG AACCTAGCAT AGGATTTACT GATCTGCCTT TTCTAGTTCT AGTCCTGCAA TAATTTTCTC TTTAACCATA 005520
005521 TTCTTCTTTA GTCACTTGGC GTTGTTTCCT TTTTTTGTTT CAGAGCCTTA TAAAATTCCT TCCTTAGCAA AAAGACTTTT 005600
005601 TTTCAACCTA CCTTAACTCC CAAGCAAAGC TTTCCTTTTC AAGGTTTATT GTTGTTTCCC TGAGGGACAC TATCTTTGAA 005680
005681 GACCTTTTCC AACTGCTTTG GTGTGTCTTT GAAGAAATCT TATATCTCAA ACATTTTAAA GATCTACAGA TTTTATATTT 005760
005761 TGTTGGCAAT GTATTATATA ATCCTCATAC TGTATCTTAA ATGGGAAAGA TGCCAGCAGC ACTGAACTTG CCAAAATAAT 005840
005841 ACTGAAAGTT CCATTTTTCA CATATCTCAT TCTATTCTCT TTTTATTTTT TTCCTTACAG ACACCTAAGG TAGAAGTGCA 005920
005921 ACAAGACTTA TCAAATTTTT CCACAATTTT ATCCAAAACC CAAGAAATAT TTTCACGATG GATGTGAGCA ATCACACATC 006000
006001 CATATTTATT ATAAGGATTT GTGTctgggt acagtggctc atgcctataa tcccagtact ttgggaggtc aaggtggaca 006080
006081 aatcacttga ggtcacgagt ttgagaccag cctggccaac atggtaaaac ccatctctac taaaaataca
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Predicted Small Protein

Name NONHSAT059838_smProtein_3761:4006
Length 82
Molecular weight 8875.8131
Aromaticity 0.111111111111
Instability index 43.1271604938
Isoelectric point 5.24957275391
Runs 13
Runs residual 0.0183141198594
Runs probability 0.066759066759
Amino acid sequence MCHCLTMVVTGSLPCPFGEVLVPCLLLFLMDTCLGLFIVGVFTLVCGLFGGFIGCVCLEN
LHNLPIEILTFFHQCLCFSTR
Secondary structure LEEEEEEEEELLLLLLLLEEEHHHHHHHHHHHHLLLEEEEEEEEEELLLLLEEEEEEELL
LLLLLHHHHHHHHHHEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHH
HHHHHHHLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTT
TTTTTTTiiiiiiiiiiiiii