NONHSAT059838
Revision as of 22:40, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059838 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6150 nt |
Genomic location |
chr18+:71015791..71021940 |
Exon number |
1 |
Exons |
71015791..71021940 |
Genome context |
|
Sequence |
000001 GACATCAATG AAATATGAAG AAAGGTAAGA GAAAAGTTTC TGGGGAAACT AGAGACTCTG TTGTCAGAGA GCACAAAGCT 000080
000081 GATAAAATGT CTAGTACTTC CAAGTTGCCA CTGTTAGAAG GCTGAGGTTA CCCTGAGAGA ATCACAGTAC TTGGAGCACT 000160 000161 GCTTTAGTAG TCAATAGTAC CTCGTTTACC TGCTTCCTGA TGCAAAGACC ACATCTTGCC ATCAGTTCAT ACACAGTCAC 000240 000241 TTCTGGCTTT TCCATGATCC TGAACACCAG CAAGCCCAGA GGATGCACTG GAAGTAAATA CCAACTAAGA TGAGTGATCC 000320 000321 AGAGTGTAGA GGAAAGGGGA GGAAAACCAC CACTAAGCAA ACTCCCCCTA GGGAAACTAG TAGAAGTAAT CAAATCACAG 000400 000401 AGGTAGTTAG ACTGTATTAA TGTTTACCAT ATGCATAATT ATGACCACCT CAATGAACAT AAACATTCAT ATAGGTCAAT 000480 000481 TTTAAATGTC TAATTTCATA GTTAGTGACG TTGTTTCATT TTTCTCAGAT CGGTGACCTG GGCTCCTTAT GTGCCTGAAA 000560 000561 GAGTTTGAGT TTCCTGTTAA CTCCAAATCA ACAGTATTTT CAACAAGAAA TGTGCAATTG AAATCAAGTG CTGTTTAAGT 000640 000641 GCAGCTAGGA TTTCCACAGG AAGACACTTG CAGTGAACAG AGTTATGGAG CAGCAAAAAC ACAGATCTAT TTGGAAAAAG 000720 000721 AGAAAACATA TGCGTTGTAT TTTGCTTCAA TTATAAAATA CCATCCTCTC AAAGGTGGTT CTAAATTACA AAGGACTTTG 000800 000801 ATTTCTAGGT AGATTCTGGG TAGAGACTTC CTTTCATATT GAGGCATTAA TGACACCttt taacctggga agcaatatga 000880 000881 ctggagttgt actttgagaa gattaatcag gtttggttgc agaatgaaag agaagatgaa gtcaagagat tggtttagag 000960 000961 gctctagcag AAGCTTAGTC ATATTTCAAA ATGATCAAAT ATCAAGAAAA ATTCTGAGCT GCATAACTTG TATAAAGTAA 001040 001041 TTTTCAGTGA TTTTTTTCAT GGTTATGATA AAAGAACTGG ATTAGCAGAA ACTTTTACCC TGAATCAAGA TTTAATTTTT 001120 001121 CTTTGAGCTC ATCTTAAGGA TATCGGAACA TAGGGAGCAA ACGATGGTGT GGCTGCCTCA GTGCTTGATT TTTAACGGTT 001200 001201 TTGAAGAGAA TAGTTACATT TCTTCTCCTA GTAAGAACTA ATAAATACAT TAACAGAAAT GAATTCCCTA TCCCTTTGTA 001280 001281 CACTGGTCTA TTTCTTCAAA ACATTAAATA CTATTGATAA GATATCACCT TTTATAATTT GTGTTCATTA CAGTTCTCTT 001360 001361 GTCATGAAAT GCAAATGAAA TGTAGTATAT ACTAACAGCT TTTACAGAAA GACTAATCCT AAGAGAATCa tatttttaaa 001440 001441 tttgaattta taataattat GTTGTACATT ATGGTTTCGA TATATGTATA TGTTGTGGGA TGAGACACGC TCTTATTTTT 001520 001521 TAATTTCATT TATTCATTTT TCAGTTTACA TTattgtccc ctttgaagta aaatttaata ggatgttctc aaattttatt 001600 001601 gagggttgac agacggccaa ggaaaatgtt tatttttatt ttttcatcaa aatacaactt gcattttgat taacctttat 001680 001681 attctaaaaa gaactctttc agaatgcagt cagaaagggc aaataagtct ctttcataga aatgataaaa tttccttcaa 001760 001761 cagacaaaga gatcgatggg aaagtcatgt ttttgcattt gtcacagctg ctgataaact aagaacaaat CAAGTGAGAC 001840 001841 AAGGGAGGAG CCATTTTACA TATAATTCCT GATAAGATTA TCTATTTCAG CCTCCCTCTC TTCCCTTCCT TTATGGAATT 001920 001921 TTGCATTCTC TTACTGCCTT TAATGTTACC GTCCTGTTGC ATATGTATTT TTACCATGCA ATAACTCATA TTTATTTTAA 002000 002001 AGAACTCTAG ACTTGAAGTC AGTGGATCAC AAGGAATGAG GGGGTTTGGA TATGAGACCT AAATATAATG TAAAGCTTAT 002080 002081 TATGATCTTA CGGTGGGTAG AGAGATGGAG CTTAAAAGGA TCATAGGAAA GAAGTATTTG AACTACATTG CTGAAAGTAG 002160 002161 CAAAAATATA AATCATTTAT ATATGGAAAT TTGAGTAATA CATTAAATAC ATGGTAAATT ATTTGGGAAG GTTATGTAGC 002240 002241 TCACATTTTA TTATACCTTC TCTATCCTAT GCAGTTTAAT ACACACGATG GGCCCTCCAA GTTAAATAAC CCAATGAAAC 002320 002321 GGGAACATGC TCTTTTGTAT TGAAGTTAAA TTTAGTGAAG GCCACCCACT TTCAATAACA TTGAAGCACA TATATTCTGT 002400 002401 TGTTGCTGTC CATTAATATT TATTTTTCCC CGTACAATGA AGTATGAAGC TATCGAGATA GGTTTCATAA ATGACCTATG 002480 002481 AACTGTTATT TCAAAGCACA CAAACTATGT AAATTGGGAG TAGTAATTAT ATCCTTTACA AATAAATTCC TGTGTCCTTC 002560 002561 ATTATCAATT TAATGGAGTA TTCTTTAGAG CTCAAAAGGA AAATAAATAA TCATGGTGTT TAATATTGGA AATTCTAAAC 002640 002641 TTTATCTGAA TAAAAGAGTG AAACCACAAA TGCTAATATT TTTATCTTAT TAAAAGCTAA TTAAGAAATC CCTACTGGAA 002720 002721 ACTTTACATC TAAATGCCTG GTTCTTTGGA GAGACATCTG AGTCAGGCTG AATTAAGAAA TGAAGCATAA TATTTATAAC 002800 002801 CCTAAGAGCT ATGCAATGGC TCTTAAATTT GTGATTAACA GAAAATATAA CAATTCTCTA AGGGGAAGAA ATCATTCAAA 002880 002881 ACCAATTTTC AATTCCCTAA ACATGTTATT TTTTAAAGAC CCAGTGAGCC ATGTTGAATA TTCAAATTAA TTAATAATTA 002960 002961 TCATAAAGTG TACTGCTACG ATGCGTTCTG AGATAATTCA AAGAGGAGTT TTACCTTGCA GCTGGAATAA AATTTCCATT 003040 003041 CATTTACCTC CTAGATGTGT AAACAACATT ATTAAGTCAA TTTATCAAAT GAATAAATAC TATCATGTGT GACAGCATGG 003120 003121 TTAATGGAGA AATTAAATAT AAAGGGTAAA ATTGTGCTTT AAACATGGAA ACTGCATTCC CTTTGGACTG GTAAAATTGT 003200 003201 AGCCTGGTGG TCAAGAAATA CAAATCTAGA AAGAGGATGA CAGAGGcttt aactctattg cccccagatt ttgacttttg 003280 003281 gttgtctcaa tttatataat tttctgttgc ctatcactta acacgttgct gtagctatta ttgtttttga tagttttgcc 003360 003361 ttttaggctt cacactagtt ataagtggat tgcacttcac aattacagtg ttgaggtatt ctggggttgt cttcatttta 003440 003441 cctatgagtt ttataccttt gaatgttttc ttgtttcacg ttagtgtctt tttctctcag agtgaagcat tttcttttgt 003520 003521 atttcttata tgactagtca ggtggtggtg aattattata acttttgttt ggaaaacttt taactatgtt ttcagtttag 003600 003601 aaatatattt ctcagtttga ggatttccat ttgacattta attatttcaa tctcttcatt aaatatctct gataaatttc 003680 003681 tgaatcactt ttttttgcat tatcttggag atcactgagt ttcttgaaaa ttactctttt gaattattga tcagagagct 003760 003761 catgtgtcac tgtctcacta tggtggtcac tggttccttg ccctgtccat ttggggaggt cctggttccc tgtttgctgt 003840 003841 tgtttcttat ggatacatgc ctgggtcttt tcatcgtagg agtattcact ctagtctgtg gattgtttgg gggttttatt 003920 003921 ggctgtgttt gcttagagaa tcttcataat ttacctattg aaattcttac attttttcac cagtgccttt gtttcagcac 004000 004001 tagatgatgc ttaaagccca agtttgcctc agctccagca agtgatcaga gagcactgct gggccagaat gggggaggtc 004080 004081 cccaagggga tatcccattt cactggaagg ccttgcaagg gattcgtgcc cagaggacca tggaacacac ctcctgcaga 004160 004161 gtgttgctgc tgaacaacca cactaatttg gtatctcctt tggctgagtg acagagcaga gtttccagaa ctgtggatga 004240 004241 tggttgcacc tccctctttg tctctagatc tgtctgctgt caggcactca gaatatttcc atgggtggag acattgtcag 004320 004321 gtctccctgc caaagaatcc agaatgctga ggatgctgct tgtcatcata tctcactttt tgcagcatgg aaaccatgag 004400 004401 ttgcaggaag ttttctgcgt gcttggtgcc aggcagactg gggtgagagg tgtcatgggt ataaaaacag ggttctctga 004480 004481 ctgtttgcct gctgatttta tttctccatg accttgggaa ttaacttata tttgagttat gggttattat tggtgaggat 004560 004561 ctcagtgccg tacttttggc tttggttttc tggagtaggg gacagtgaag ccagtttgtg tccatgtcac cacttcagaa 004640 004641 ctggaaatct GTATTGTACT CTTTAAATAG ACATATGATA AGAATATTTC ATATATTTCA TATCTATGTT TTCCCAATCT 004720 004721 GACTCTAGTT TTGTATTAAT ATTGGTATTT ACAACGTAAT GACAACACTt atgtgtctat cacagttcta attactttat 004800 004801 atgatttaat gcttataata tatgttataa gtagtgatat tatctccata ctactgataa gaaaaatgaa gcatatgata 004880 004881 tttaactgtc taccgttaaa ttgtctacaa attgcctaca tagctaataa ttacgcaagt tgggatttaa tcccaggcta 004960 004961 caagtctcca taatgtatat ccttaatcac tgtgACGCTC AGGTTCATAA ATGGTCCTGC TTCTTTATAG TCGTCACTGT 005040 005041 TTGACACATG GCTTAATCCA TCCAGCCTGA CAATCACCCG CTGCAGTGGT CTCAAATCTA TGATTAGAAT ATCCTATTAA 005120 005121 AGTAATGTGT AAAGGTAAAC TTATTTCAGA CAGCATTATT TAAATTACTA AACCTAATTT ACTAATCACT AGTCTAAAAT 005200 005201 CATCTGTAAA ATATTTTATT AACCTTTATA ATAGCTATTT CCCTTAGGAT ATGACAAGCA TCTCCAATCC CATTATGTAT 005280 005281 ATTGTGAACT AAAGAACAGA AAACTTGAGC TATTGTCTAT ATTTTTAGAG ACCAGGTGTT AAAGGAGGAT TTAGAAGCAA 005360 005361 ATATTCTAAG TGACATCTCC ATGATTAGCT TGAAATCCTG CACTGCCTCC TGTACTTATC AAAAATGTTT CTAATACCCT 005440 005441 AAGACTTTAG AACCTAGCAT AGGATTTACT GATCTGCCTT TTCTAGTTCT AGTCCTGCAA TAATTTTCTC TTTAACCATA 005520 005521 TTCTTCTTTA GTCACTTGGC GTTGTTTCCT TTTTTTGTTT CAGAGCCTTA TAAAATTCCT TCCTTAGCAA AAAGACTTTT 005600 005601 TTTCAACCTA CCTTAACTCC CAAGCAAAGC TTTCCTTTTC AAGGTTTATT GTTGTTTCCC TGAGGGACAC TATCTTTGAA 005680 005681 GACCTTTTCC AACTGCTTTG GTGTGTCTTT GAAGAAATCT TATATCTCAA ACATTTTAAA GATCTACAGA TTTTATATTT 005760 005761 TGTTGGCAAT GTATTATATA ATCCTCATAC TGTATCTTAA ATGGGAAAGA TGCCAGCAGC ACTGAACTTG CCAAAATAAT 005840 005841 ACTGAAAGTT CCATTTTTCA CATATCTCAT TCTATTCTCT TTTTATTTTT TTCCTTACAG ACACCTAAGG TAGAAGTGCA 005920 005921 ACAAGACTTA TCAAATTTTT CCACAATTTT ATCCAAAACC CAAGAAATAT TTTCACGATG GATGTGAGCA ATCACACATC 006000 006001 CATATTTATT ATAAGGATTT GTGTctgggt acagtggctc atgcctataa tcccagtact ttgggaggtc aaggtggaca 006080 006081 aatcacttga ggtcacgagt ttgagaccag cctggccaac atggtaaaac ccatctctac taaaaataca |
Predicted Small Protein
Name | NONHSAT059838_smProtein_3761:4006 |
Length | 82 |
Molecular weight | 8875.8131 |
Aromaticity | 0.111111111111 |
Instability index | 43.1271604938 |
Isoelectric point | 5.24957275391 |
Runs | 13 |
Runs residual | 0.0183141198594 |
Runs probability | 0.066759066759 |
Amino acid sequence | MCHCLTMVVTGSLPCPFGEVLVPCLLLFLMDTCLGLFIVGVFTLVCGLFGGFIGCVCLEN LHNLPIEILTFFHQCLCFSTR |
Secondary structure | LEEEEEEEEELLLLLLLLEEEHHHHHHHHHHHHLLLEEEEEEEEEELLLLLEEEEEEELL LLLLLHHHHHHHHHHEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTT TTTTTTTiiiiiiiiiiiiii |