NONHSAT059873
Revision as of 22:40, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059873 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2566 nt |
Genomic location |
chr18+:72174302..72176867 |
Exon number |
1 |
Exons |
72174302..72176867 |
Genome context |
|
Sequence |
000001 ATTTTTTATG AGATGTAATT CCATGTCATT GTCCTTGTCA CGGTGGAATT ACTAACTTGC GGTGGATTGT AGGATTAACC 000080
000081 CTCTCTGTGC ACTTGGGCGC CCCTCCAGCG TCAGACCCAC CTGTCTGCTT GGCCGTGCCC TCACTCCTGG AACTCGCTCT 000160 000161 CTCTGGACAG AAGTCTTTGT CTTTGCTCCT TGTCCGCTGT CTTACAGTCT CCGCGGATGG CACCATCTCT CTGCCACCTG 000240 000241 CACTGGGAAC TGGGTCCCCA TCCCTGCCAG GCTCTCCTCT GGGACCACTG CCCTTCCCAC GTTGAAAGCT CCCTGTCCCC 000320 000321 CTCACCCACT CCGTGGCTGG GTCCTGCTCT CCACTTCTGG GCCTTCACGG TGCCACTCCT TTTCTGGGCT GCTCCCAGAG 000400 000401 TGACCTCAAC ATGCCACTTC TCTTCTTGAC TCCTCTTGGG GGACTCAGGA TGGCACAGAG GGTCCCTCCC CTCACCTGCC 000480 000481 TTCTGCCTGC CCCTTCTCCC ACCTGTACCC AGCCACACGG GACCACGTGC AGCCCCCAGG AGCCTGTGCT GCTCAAAACT 000560 000561 GCACCTGGGC ACCTGCGCGG GCGTCAGCCC CATCACCGCT GCCTCGTCCT CTGTGAGGCC TGCCTCCAGC CATCCTCTTA 000640 000641 GCCCTCCCTG TCCCAGTCTC AGTAGGCTCC TGACTGTCAA GGAACCTAGA AGAGCACCTG TACTGTGGGA AAACTTCACT 000720 000721 CACTGCCAGC CGCCCGGCCT CCCTCTCCTT GTCAGGGAGC CCTGGAGGGT GGGGGCAGGT CACATTTGTC GGCAGCTCTG 000800 000801 AGCCAGCACC GTGCCAGCCG CTGTAGTTGT TCAGTGTTTG TTGTAGGGAT AAGGATTGTT GTTTTAGAAA AGCTTATATT 000880 000881 TGATCTTCAG TTTTTGTGAA AAGTTGGGTT TCATTCGTCA AAGGAAATTC CCCAGGTGGT GATGACTTTC AGCCTCATAC 000960 000961 TACCTTGGGC TGGGGCCTGC TGAGGCTGCG GGACCTGGGA AGCAGGCTGA GCCCCGGGAG GTCAGGAGAC TGGCCACGCA 001040 001041 GACCCAGGCC CACGAGAAGG CCACGCCTTG AGGACGGCTC CCTCCTCTGG TTCCATGAGG CCGGGACTGC GTGGCAGAGG 001120 001121 ATGGAGGAGG CGTGGGGCCT TGTCTTCAAG TTGTCGCTTG TGTTGTCAGC TTCCCCAGAA GCAATTGTGG TGAGGGGCCG 001200 001201 CTGTGACTGA TGACGCTGAT TAGAAGCAGC GTCTTGTCTG TAGTTTTCAG AGTGATAACT ACAGAAAGAA AGAAGCAGAG 001280 001281 GTTAAATGAT AAACATGTTC TTTGTTTTTT TATCAAATTA GGTGTCACAA TTGGGTGGGG GTGAGATTAT GGTTCTTTTT 001360 001361 TGACAACGGT GCCTTGAGGT TCCTAAGTGA CTGGGCTTCC TGTCCCCATT GCTCCCCGCT GCTTCTGGTA AATGGGTTTT 001440 001441 AATGAACTAA GCAGCTGGCT GCGACTCCCT GGAGTTAGAC TGGAGGTCTC CACCCTGACC CAGCAGGAAG CCATGCCCCC 001520 001521 ACCTGACCAC CGTGACCACG GTGGGAGAAG GAAGGGGTTC TTGGGAGCAT CCACGTGGCT TATCTCTTTG ATGATGCCAA 001600 001601 ATTCTCTGAC AAATTTAACG ATAGTGTTGG GTGGAAATTG GGGGCTCCTG ATCGGAAGGG GAAGCCTCTC TCGTGTTTGC 001680 001681 TTGGCTAAGG GGTTATCAGA TGTGCACCTG AGACACGCTG CTTCTGGGTT CCTTGTAATC ATCACTTTAT GAATTTGTGG 001760 001761 ATTGCTGTTC TAGGCAAGCT GTATGGGAGA GGTTCGACTG ATGATAAGGG CCCGGTGGCC GGCTGGATAA ACGCCCTGGA 001840 001841 AGCGTATCAG AAAACAGGCC AGGTATGCCC CCCACGCTGA CTTCTGCCTG AGTCCTGGGT TCCATCTGAG CCATACAAAG 001920 001921 ACAGGCTCTC TGTTCACACA ACAGCTTATA AAGCTCACAG GAAAAGATAA GACAAGCGTC CCCCAGCCCT TATCAGCACA 002000 002001 GATGACTCGG ATGTAAGAGT ATAGGTTTGT TTTCCAGCTT TAGGAAACAT TCAAAGTGTA ATTGTTTTAC AGCTGCTTAA 002080 002081 AGGTCACAAT ATTGGCGACT CAGCGTGATT TTTGCCACCG CATGAAATGT GACTTTTCAG TCCCTGCCTG TCTCTGTGAG 002160 002161 TGTGGTCCCT TGCCAGAACA TAGTGCAGGC TCTGTCACAT CACACAGGCC CCTCACTGTC TCTGTGTGGT TTACGTCCTC 002240 002241 CTAAAAATAA ATTCTGATTT TTAAAATGTA TTCTCTggct gggtgcagtg gctcacacct gtaattcctt tgggaggaat 002320 002321 tactttggga ggctgaggtg ggtggatcac ttggggtcag gagttcaaga ccagcctggc caacatggtg aaaccccgtc 002400 002401 tctactcaaa ctacaaaatt aaccgggcat ggtggtgggc acctgtaatc ccagctcctg ggaggctgag gcaagaaaat 002480 002481 cgcctgaacc agggaggcag aggttgcagt gagccgagat catgccactg cactccagcc tgggtgacag ggcgagactc 002560 002561 tgtctc |
Predicted Small Protein
Name | NONHSAT059873_smProtein_410:640 |
Length | 77 |
Molecular weight | 8172.6721 |
Aromaticity | 0.0131578947368 |
Instability index | 94.8657894737 |
Isoelectric point | 8.97772216797 |
Runs | 10 |
Runs residual | 0.00983061101028 |
Runs probability | 0.023282105635 |
Amino acid sequence | MPLLFLTPLGGLRMAQRVPPLTCLLPAPSPTCTQPHGTTCSPQEPVLLKTAPGHLRGRQP HHRCLVLCEACLQPSS |
Secondary structure | LLEEEELLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLL LLEEEEHHHHLLLLLL |
PRMN | - |
PiMo | - |