NONHSAT060078
Revision as of 22:40, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT060078 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5186 nt |
Genomic location |
chr18+:77822752..77830758 |
Exon number |
3 |
Exons |
77822752..77827308,77829798..77829906,77830238..77830758 |
Genome context |
|
Sequence |
000001 TTCTAATGTC ACAACTTCCA AAGCTGTCGG AAACCTGCAT TTAAGTGCAC CTGTCAAAGT CCTATGGTTG ATTATAAAAC 000080
000081 CACCTTTTAA AGAGGACCAA AACAAGACAA TTGTCTGTGG ATGACAAAAG TCTTAGGCCA GCCACTATTA AAGTCAAAAT 000160 000161 TGATAATGAA ATTTGGTTAT TTCTGTGGCA TATAACAATG TTATGTAACA ATTTTCACTA TTAATAACAT ACACTAAGTC 000240 000241 ATATCAGAAT TATAGAACTT TCTTATAATT TTGGAACACA TACCAATAAC ATATTTATTC AAATACAGCC CAAAGTTAGC 000320 000321 CAAACATTAT TTCATATTTG ACAATGCTTC CTGTATGATT TTTATACCAA ATAAGCCAAA TCTCACCTTT ACATTAGTGT 000400 000401 ACTATTAATG CTAAACCCTA ATCTTAATAA AACCTTATAG ACAAATGTAT TTAATCTTAA TCAGTTTGAC CATAAGGTAA 000480 000481 GATTCTTTTT TTGAGACAGA GTTTTGCTCT TGTTGCCCAG ACTGGAGTGC AGTGGCACAA TCTTGGCTCA CTGCAACCTC 000560 000561 TGCCTCCTGG GTTCAAGCAA TTCTCCTGCC TCAGTCTCCT GAATAGCTGG GATTGCAGGT GCCCACCACC ATGCCCAGCT 000640 000641 AATTTTTGTA TTTTTAGTAG AGACAGGGTT TCACCATGTT GGCCAGGCTG TTCTTGAACT CCTGACCTCA GGTGATCCAC 000720 000721 CTGCCTGGGC CTCCCAAAGT GCTGGGCTTA CAGGCATGAG CCACCATGCC CGGCCCCTAA GGTAAGATTC TTATACCTTT 000800 000801 TATAACCCTT TACAATTTTT TTTTGTTAAA GAGTGGATTA TAAGCAGGAT TTTGCTTTAA GAAAAACCTG TTATGTTTTT 000880 000881 ATTCCTATGT TTAATTTACA GGAAAACTGA ATAATACCCC TTTAACTTTA GCCAATGTCC ATACACAGAA TTTCTTTTAC 000960 000961 AATTAATTTT TTACAAACCT TCCACAACTT GTTCAAACCT TTAGCTTGAT CCTAACTTAA AACAATACTT TAACCCTTTA 001040 001041 ATCTAGGCAG AAACATCCAC ATTCCCATGA CTTCTTATAA TCTTTACCAA AAGTATATTC TACTTTCCTT TTCGCCTTGG 001120 001121 GTGTGGAACT ATTTCTTGCG TAGTCTCAAA TACAGTGTTA GCTTTTAGCA CCTTTTGCTT TTGGTGAAAA TCTTGGTAAG 001200 001201 TCAGGGATTT TTCATTATGT GCCAGGTGTG GGGCCTAGCC TGGGACCCAC CAGACAGAAG TGCAGATGAG GGCAGACCCT 001280 001281 CCCGCATGGC TAGGGTGTGG CTCTCCACAT GTCCCCAGGC CTTAGCTAGA ATCTAATGTC CCCAAGCTAG GTAAATTGGA 001360 001361 CAATTTTCAA AAGTCAAATA AGCAGTTTAT GACCTTAAAG CATTGAGTAA ACTTCATATC CTACCTGCAT AATTTAGACC 001440 001441 AAATGTCTTT ATTTTACCAA TAATCTTTAA AACTTTTTAT TTCCCAAAGA TTACTTCAGT CACATGAGCT AAATAAAAGT 001520 001521 TATTACACTA TTTACTTTTC TGACAAAATA TTTGATTTAA GCTGTTATTG TAATTAAACC AATTAATCAA AACTCTTTTA 001600 001601 TATTACACAC ACAACACATA TAAATAGAAG ACGAAGGACT CATCCCCTAA GACAGGAATT GGGCCCTAAA CACGGGCCGC 001680 001681 CATTGTGAAA AAAGAAAGCA CAACCACATG GTTACAAGTT CAAGCTCCCA GGGACCTACA AGACAAGAGG GAAACCTCAT 001760 001761 CCAGTTTCGT TTTTTTTTCA GGGACCTGTA GCAACGTTTA TAACTGACCA GTTTGCTGGG GCATCTTGAA CAGTGGGCTT 001840 001841 ATAGGAGTCC CGCTCTCCGT GGTGGTTCCC ACATCCACTC AGGGGTGTCT GGGTTCTCAG GGACACCTGC TTCTTGCTGG 001920 001921 GCACCGTGGC CTGGACTTAC CACCTGGCCT CCAGGGTTCA GGCCGTGGAC ATCTGCCCTG AAGTAGCCTG TGGGGACTGT 002000 002001 CACGCCACAG TTAATGTCCT GGGTCCTTGG CATCAAGTCT GTAAAGCTGT CTTTGCTTTC TCAACAGCAC TGTGTGGGAG 002080 002081 TTGGCTGGGC CTCGGCGACT GTTGCCTGTC TCTGTCGTCA CTAGGATGTT AGCGGGAAAT GGTGGCGTTC TCTCCACGCA 002160 002161 GTTGCTGCTT TGCCTGTGGA TCATGTTTTT CTTCTCCCTA TTGATCAGCA CACATCACAG ATTTGATTTG AGACGGAGTC 002240 002241 TTGCTCTGTC ACCCAGGCTA GAGTGCAGTG GCGCGATCTC GGCTCACTGC AACCTCTGCC TCCCGGGTTC AAGTGATTCT 002320 002321 CCTGCCTCAC CTCCCGAGTA GCTGGGATTA CAGGCACCCG CCACCGCACC CGGCTAACTT TTGTATTTTC ACTAGAGACA 002400 002401 GAGTTTCACC ATCTTGGCCC GGCTGGTCTC GAACCCCTGA CCTCGTGATT CACCTGCCTC AGCCTCCCAA AGTGCTGGGA 002480 002481 TTACAGGCGT GAGCCACTGG GCCCAGGCTA TTTTTTAATT AAGTTAATAG TAAGTTATAA ACAACACATT ATAAATAATA 002560 002561 TAAATTACAA ATAATACATT AATAAATTAA TAATACAATT TTTTTAATTT TAATTTTTAA CATGTTAGGC ATTGAGGTAA 002640 002641 GTACAGTGGA TAAACACCCA TCACGCACAG AAAAAAGGAA TGAGGAAGGC ACGTTTGCCA CACATCTGCT CCCTGCTCTG 002720 002721 GGAGCCCTCC CTGTTCCTTG TGGTTTAATC TTCTAGAACT CTGATGGCGG CATTACTGTG AGTTTTGCTT CTCCAGAAGG 002800 002801 CTTCTTCTTA AAGCTTTCTG AGCACTGGTA CTCACAAAAC TCTCCCCTGG TGAAATGAAA ACACACACAG GCGGGAAGTG 002880 002881 AGCCAGTTCT CAACTTGAGT GGCTTCTCCC CAATGCATGC TTTTTAAAAC TTCCAGCGTT TTCTAATCAG ATCTGGGCAA 002960 002961 TATTGTGGCA TCACCTCCTG CATCCGCCTT TACCCTCCTC ATCCTGTTCT TTGTCCTAAA AAAGGCTGTG GGACCAGCCG 003040 003041 GTCTCAGAGC CCAGGTGGAG CCTCAGCTCC CCTGCGACCT GTGCTTTTCC GAGGGTGCCG CCTGGCAGGG CCTGCGTCAG 003120 003121 GGTCACCCTG GCAGGACCAG AGGTCAAAGG TCACCCTGGC CAGACCAGAG CCTCGGAGGT CCCTGGGCTG CAGTGAGGGA 003200 003201 GATCAGAGGT CGTGGGCTGG GGCCAGCCAA GAAGAGTTGG GGGCAGCAGG GAGCACAGTC TGGCCCTTGA CATTCCCACC 003280 003281 TGCTTGTCTG CTCCACAGGA CAGTGGTCAG GAGGGCCCGG GAGTGAGTGT GCAGGGTCCT GGGTGGGCTC CACATGCATC 003360 003361 TCATGGGGCA GCAGGACCCC GATGAGGGCA CCCACAGGGT GGGAGGGTGG AGAGCTCTGC TAACCAAGAT GGGGAGGCCC 003440 003441 GGGTCAGGGC CAGCTCTGCC TCCGAGGCTA TATCCAGCAG CCTTCGGCCT TGCCATGTGA GCTCGTGGAA GCCCATGCAG 003520 003521 TGTGTGCCCC TCTGGTTGTA TCTGGTGAGG CCTTGTACAG GGATGAGCTC GGACCTGAGT TTCAGTCAGC AGAAAAATAA 003600 003601 GTTTCTGGAG GACTTGATTC TTTTCAGGGC ATTCAGTTCT GTGTTTCCCC TGTACCCAAG ATGAGATTTC TAATACAGTG 003680 003681 ATGTGTTTAA AATTAACCAT ATCTCCAGGG CAGCATCCAG CTGTGAGCCT TGGTGAAGAA GGTCCTGGAG ACGGGAGTGA 003760 003761 ATGGGGTGGG GCCATCCTTG GACACACAGG AGGTTCCTGG GCCCTGGGGA TGTGTCCGTG GGTGCTGAGG AGATGAGGGG 003840 003841 TGCATGCTGT CTGGGTTCTT TTCTCTCCGC TCCATCTCTT GCAAGGTGAG GAGGGGTCTG CTGTTGATTC CTGTCCTGCC 003920 003921 TGTGGTGCTG AAGCTCCCCT CAAGCTGGGC TTTCTCAGCA GGGAGAGTTT CTTCATTGCT TGTAGAAGTT TATGCTTCCC 004000 004001 TGCTTTAGTC TGGGCAAATT GCTCCCCAAA GGACATGAGA GCTGAGGCTG TGTTTTTAGA GATAGGGAGC AGCTACAGGG 004080 004081 ACTTAGCTTC TTAATGAATT AATTCACAAA TCTCAGCAGC TCCTGGCGAT AAGATATGCA GAGCTGATGG CAGGGAGGAC 004160 004161 ACGAGGTGGC TCAAAGGGAA CTAAGCTTTG CGTGTGAATT TAGGGTGAGG CTAAGAGCCC TCCAGGCAGG CAGAGGAGGG 004240 004241 TGCTGGAGGG AGGAGAGGCC GGTATAGGAC CTTCGCCTTG AAGAAAGCAC CCAGGTAAGG CTGGGCAGTG TTGGGAGAGA 004320 004321 GCTTTAGTTG ATCTTTTTGT TTTTGGATGT TTTCTGATGG TCCTCTATGG CTTTGGAAAA TGGAGAGAAG ACAGAGAGGC 004400 004401 GTAGGCACTG AAGGCTGCAG CTGTGATTGA GGATCACGAC GCCTGTTGGG GCTGCTCACC TGCCTAGGCC TGGGTGAGGA 004480 004481 GGTGCTGGGG CCTGGCTGCA CACACGTTCC TGCCCCAGAA CTCAGTTGGG GGCTCGGAGC AGGAGAAGCT GCACACGGTG 004560 004561 GATGAAGACC TGATCATTGA AGTTCACCAG TTATTTTTCT CAAGAATGTG AATAACAATG GGATTTGCAC TCATTATATT 004640 004641 TTTAGAATGG CTTCGCATAA TTTTCAGTTG GGCGTGGTGG CTCACGTCTG AAATCCCAGC ACTGTGGGAG GCAGAGGCGG 004720 004721 GCAGATCACG AGGTCAGGAG TTCGAGACCA GCCTGACCAA CATGGTGAAA CCCCGTCTCT ACTAAAAATA CAAAAATTAG 004800 004801 CCAGGTGTGG TGGTGGGTGC CTGTAATCCC AGCTACTCAG GAGGCTGAGG CAGGAGAATT GTTTGAACCC AGGAGGCGGA 004880 004881 GGTTGCAGTG AGCCAAGATC ATGCCACTGC ACTCCAGCCT GGGTAACAGA GTGAGACTCT GTCTCAAAAA AATAAAAATA 004960 004961 AATAAAAATA AACAAATTAA TTAATTTTAA AAAAGAAATG ACCTATTTGG AAACCAAATT TTCTTTTTGG AAGGCCCCCA 005040 005041 TTTTGTGTTC AGTGAAAAAT TAGTTGGCAA GACATGGACT TCTAATCAAG TTATTTTTGT AGTTGTGCTC AGAATATCTG 005120 005121 TGGAATATTA GCTGACGCAG AGTAGATTTT TCACGTTAGA TATTGGAATA AAGAGAGTTG CTCCTT |
Predicted Small Protein
Name | NONHSAT060078_smProtein_3680:3835 |
Length | 52 |
Molecular weight | 5274.0023 |
Aromaticity | 0.0588235294118 |
Instability index | 43.2039215686 |
Isoelectric point | 5.98773193359 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.021412168471 |
Amino acid sequence | MCLKLTISPGQHPAVSLGEEGPGDGSEWGGAILGHTGGSWALGMCPWVLRR |
Secondary structure | LEEEEEELLLLLLLLLLLLLLLLLLLLLLLEEEELLLLHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |