NONHSAT060386
Revision as of 22:42, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT060386 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2753 nt |
Genomic location |
chr19-:1985447..1988568 |
Exon number |
3 |
Exons |
1985447..1986648,1986829..1986975,1987165..1988568 |
Genome context |
|
Sequence |
000001 aTTGTTAACA TTGTTTATTG AGTTTTGATA CTCAGTCTTC CTGATTCACT TAACCCATAA TGGTCTGTTT CTCACCAGTT 000080
000081 ATTAAACTGT GTCTGCACTG GGCTGGCTTG CAGCTGAGCG ATGCGGAGTT GAGCCCACCT TGGTTGATGA GTGATTAGGT 000160 000161 CTCAGGCAGG CAGGGCTGCT CTCATTAGAG CAGAGGGTGC TGTGTCCTGG CACTCCTGGG GGTGGATGGT GGACCCCCAA 000240 000241 TTCTGCCCCT CCTGGCCTCC CCTCCCTACC CAGAGCCCCT TCACATCCCA TGCACAGTCC CTCTGCCTGT GACATCTCTG 000320 000321 CACCGGGATT AAGAGCCTGG CTCTTGGAGT CTGCCTGGGG TCCGCTAGCC ATCACCCCTG GGGGTGTAAG CGCTTGAGAA 000400 000401 GGTGTCTGCC TAGGGCCCAC CGTGGAGAGG AACCCCCAGA CTGCTTCTAG AAGCCAGGGC TGCAGCCTGG GGGGTACAGG 000480 000481 CCTAGCAGGG AGCCACAGTG ACCCCTCCCA GCCAATGGCC CTGAGAGAAC AGGCAGTGGA GCCCCCCGCC CCCACCCACA 000560 000561 GTGAAGTGAC GGGTGGTCCC TACAGTGGGG CCAGACCCTG AGACATCACC CCTGAGTGAG TGCATCTGTC AGACCCTGAG 000640 000641 GCATCGCCCC TGAGTGAGCG TATCTGTCGG CCTCTGGTCT GTGCCCTGGG ACCTCTCCCT AAAAGCCCAG GCAGCAGGGG 000720 000721 CCATGGCTGG TGGCTAGTCC CCCGGGGAGG GGCTGCCCAG GTCCCTGCAC CTTGAAAGTC CGACGCAGAC ATCTTAGGGG 000800 000801 GAAGGAGCGT GTCCTCCCAG GCACTCGGGA TCCTGGGGTG CAGCCCGGCC CTCCCCCACA CCCTCCCTGT GCTGCAGGTC 000880 000881 CCGCACAGTC GGGCATCCTG GTGGACCGCG AGGTGGTCAG CCTCTTCCTG CACTTCACCG TCAACCCCAA GCCACGAGTG 000960 000961 GAGTTCATTG ACCGGCCCCG CTGCTGCCTG CGTGGGAAGG AGTGCAGCAT CAACCGCTTC CAGCAGGTGG AGAGTCGCTG 001040 001041 GGGCTACAGC GGGACCAGTG ACCGCATCAg gtggggcttg gggtgcaggc gggggggtcc ggacatgggg gtggaggact 001120 001121 cggggatgac ggagatgggg ggccgggcat gggggtggag aactcaggga tgatgaagac ggcggggggg ccgccgggca 001200 001201 tgggggtgga ggactcaggg acgatggagg ggaccgggca tgggggtggg CTCGCCCCAG CTCACCTTAG GCTATCCCTG 001280 001281 GGTATCCACG CTGCTGCCTG TCATCTGCCA CGGCAGGTTC TCAGTCAACA AGCGCATCTT CGTGGTGGGA TTTGGGCTGT 001360 001361 ATGGATCCAT CCACGGGCCC ACCGACTACC AAGTGAACAT CCAGATTATT CACACCGATA GCAACACCGT CTTGGGCCAG 001440 001441 AACGACACGG GCTTCAGCTG CGACGGCTCA GCCAGCACCT TCCGCGTCAT GTTCAAGGAG CCGGTGGAGG TGCTGCCCAA 001520 001521 CGTCAACTAC ACGGCCTGTG CCACGCTCAA GGGCCCAGAC TCCCACTACG GCACCAAAGG CCTGCGCAAG GTGACACACG 001600 001601 AGTCGCCCAC CACGGGCGCC AAGACCTGCT TCACCTTTTG CTACGCGGCC GGGAACAACA ATGGCACATC CGTGGAGGAC 001680 001681 GGCCAGATCC CCGAGGTCAT CTTCTACACC TAGGCTGCCC GACACCGACA CCGCCCTCCC TCCGTGGGGA TAGCCGCAGC 001760 001761 CCCAGGCCAT CATCTGCTGC TGGGGCCCCC CCACCACGCG GTGCCAGGCC CAGTGTCCCC CAGGCCGTCT GTCCACTCCA 001840 001841 TGCCACCTTT CTCAGCATCA GGACGGGGTT GCCCTGTGTT CACCACGAGT GTGGCTGCTG GATCAGGGCA GCCGGGGAGG 001920 001921 TGGCCAGGCC AGTGGCCAGG CCCTGTGGAG ACAATCCCTC AGGACTAGGG ACAGGGCTGT GCCGGCCTGG GCCAGGGCCC 002000 002001 ACGGACCCGC AGCTCAGGGC GCCTGCCCAC GTCGTCTGCC GGCGGTGCGC CGCGGGCGTC CCTCGCGTCT CTTCACTGCA 002080 002081 CATTGCAATG CATTTGCGAT TCCCATTTCT CTGCTAGGAG CCAGCCTGGG TGGCGCTGCT CCCAGAGCCG TGGGTCCCAG 002160 002161 ACCTTGCGTT CCTTTTGTTC CTGTCCGTTT ATCAGGACAC GGGCCCCACC TGTCACGTGC CCGAGGCCAC CCAAGCCCAG 002240 002241 CCTGCGGGGC GTTCCCACTG CCTGGATGCC GGCTTGAGTT CTGCGCACGC AGGATTCAGT GTGGGGACGG CCCCTGCCGG 002320 002321 ATAGGCCTAG CCCTGGCCCA GGTGGTGAGC GGTTTGCAGT GTCCGTTCTC ATCCACCTGA TGGGCCCAGA TAAAGGCCCC 002400 002401 CGCTGTCCAG CCTCCCTGGA CGGCCCTCGC GGTCCCTGCA GCCCAAGATG GGACTCAGAC CCTGTGCCCC AGAGCTCCCC 002480 002481 TGCCGCAGAA TGGGGCCCCA GCCGGCCCCG ACCGGGTCCA GGAGCACTGC TCGCCTGTAC ATACTGTTGC CCTAGCCCAC 002560 002561 CTGGTGCCGT GGGAGCCACC CCCAGGTGCT GGGGGCACAG CCCCTCCCCA CTCCGGCCAC GCCCCCACCC ACCCCGCGTG 002640 002641 TTTCTGCCCT GTGACTCCTG GAACCTGCGT CCTCCCCAAA GCCATGGGAG GGGTGTCCTC CTCAGACCAT GCCCCCAGAT 002720 002721 GATTTTTTTA AATAAAGAAA CAAATGCACC TGC |
Predicted Small Protein
Name | NONHSAT060386_smProtein_1148:1420 |
Length | 91 |
Molecular weight | 9499.7025 |
Aromaticity | 0.0333333333333 |
Instability index | 40.1188888889 |
Isoelectric point | 8.10833740234 |
Runs | 11 |
Runs residual | 0.0176366843034 |
Runs probability | 0.0476626358979 |
Amino acid sequence | MGVENSGMMKTAGGPPGMGVEDSGTMEGTGHGGGLAPAHLRLSLGIHAAACHLPRQVLSQ QAHLRGGIWAVWIHPRAHRLPSEHPDYSHR |
Secondary structure | LLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLHHHHHHLLLHHHHHH HHHHLLLEEEEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |