NONHSAT060386

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT060386

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2753 nt

Genomic location

chr19-:1985447..1988568

Exon number

3

Exons

1985447..1986648,1986829..1986975,1987165..1988568

Genome context

Sequence
000001 aTTGTTAACA TTGTTTATTG AGTTTTGATA CTCAGTCTTC CTGATTCACT TAACCCATAA TGGTCTGTTT CTCACCAGTT 000080
000081 ATTAAACTGT GTCTGCACTG GGCTGGCTTG CAGCTGAGCG ATGCGGAGTT GAGCCCACCT TGGTTGATGA GTGATTAGGT 000160
000161 CTCAGGCAGG CAGGGCTGCT CTCATTAGAG CAGAGGGTGC TGTGTCCTGG CACTCCTGGG GGTGGATGGT GGACCCCCAA 000240
000241 TTCTGCCCCT CCTGGCCTCC CCTCCCTACC CAGAGCCCCT TCACATCCCA TGCACAGTCC CTCTGCCTGT GACATCTCTG 000320
000321 CACCGGGATT AAGAGCCTGG CTCTTGGAGT CTGCCTGGGG TCCGCTAGCC ATCACCCCTG GGGGTGTAAG CGCTTGAGAA 000400
000401 GGTGTCTGCC TAGGGCCCAC CGTGGAGAGG AACCCCCAGA CTGCTTCTAG AAGCCAGGGC TGCAGCCTGG GGGGTACAGG 000480
000481 CCTAGCAGGG AGCCACAGTG ACCCCTCCCA GCCAATGGCC CTGAGAGAAC AGGCAGTGGA GCCCCCCGCC CCCACCCACA 000560
000561 GTGAAGTGAC GGGTGGTCCC TACAGTGGGG CCAGACCCTG AGACATCACC CCTGAGTGAG TGCATCTGTC AGACCCTGAG 000640
000641 GCATCGCCCC TGAGTGAGCG TATCTGTCGG CCTCTGGTCT GTGCCCTGGG ACCTCTCCCT AAAAGCCCAG GCAGCAGGGG 000720
000721 CCATGGCTGG TGGCTAGTCC CCCGGGGAGG GGCTGCCCAG GTCCCTGCAC CTTGAAAGTC CGACGCAGAC ATCTTAGGGG 000800
000801 GAAGGAGCGT GTCCTCCCAG GCACTCGGGA TCCTGGGGTG CAGCCCGGCC CTCCCCCACA CCCTCCCTGT GCTGCAGGTC 000880
000881 CCGCACAGTC GGGCATCCTG GTGGACCGCG AGGTGGTCAG CCTCTTCCTG CACTTCACCG TCAACCCCAA GCCACGAGTG 000960
000961 GAGTTCATTG ACCGGCCCCG CTGCTGCCTG CGTGGGAAGG AGTGCAGCAT CAACCGCTTC CAGCAGGTGG AGAGTCGCTG 001040
001041 GGGCTACAGC GGGACCAGTG ACCGCATCAg gtggggcttg gggtgcaggc gggggggtcc ggacatgggg gtggaggact 001120
001121 cggggatgac ggagatgggg ggccgggcat gggggtggag aactcaggga tgatgaagac ggcggggggg ccgccgggca 001200
001201 tgggggtgga ggactcaggg acgatggagg ggaccgggca tgggggtggg CTCGCCCCAG CTCACCTTAG GCTATCCCTG 001280
001281 GGTATCCACG CTGCTGCCTG TCATCTGCCA CGGCAGGTTC TCAGTCAACA AGCGCATCTT CGTGGTGGGA TTTGGGCTGT 001360
001361 ATGGATCCAT CCACGGGCCC ACCGACTACC AAGTGAACAT CCAGATTATT CACACCGATA GCAACACCGT CTTGGGCCAG 001440
001441 AACGACACGG GCTTCAGCTG CGACGGCTCA GCCAGCACCT TCCGCGTCAT GTTCAAGGAG CCGGTGGAGG TGCTGCCCAA 001520
001521 CGTCAACTAC ACGGCCTGTG CCACGCTCAA GGGCCCAGAC TCCCACTACG GCACCAAAGG CCTGCGCAAG GTGACACACG 001600
001601 AGTCGCCCAC CACGGGCGCC AAGACCTGCT TCACCTTTTG CTACGCGGCC GGGAACAACA ATGGCACATC CGTGGAGGAC 001680
001681 GGCCAGATCC CCGAGGTCAT CTTCTACACC TAGGCTGCCC GACACCGACA CCGCCCTCCC TCCGTGGGGA TAGCCGCAGC 001760
001761 CCCAGGCCAT CATCTGCTGC TGGGGCCCCC CCACCACGCG GTGCCAGGCC CAGTGTCCCC CAGGCCGTCT GTCCACTCCA 001840
001841 TGCCACCTTT CTCAGCATCA GGACGGGGTT GCCCTGTGTT CACCACGAGT GTGGCTGCTG GATCAGGGCA GCCGGGGAGG 001920
001921 TGGCCAGGCC AGTGGCCAGG CCCTGTGGAG ACAATCCCTC AGGACTAGGG ACAGGGCTGT GCCGGCCTGG GCCAGGGCCC 002000
002001 ACGGACCCGC AGCTCAGGGC GCCTGCCCAC GTCGTCTGCC GGCGGTGCGC CGCGGGCGTC CCTCGCGTCT CTTCACTGCA 002080
002081 CATTGCAATG CATTTGCGAT TCCCATTTCT CTGCTAGGAG CCAGCCTGGG TGGCGCTGCT CCCAGAGCCG TGGGTCCCAG 002160
002161 ACCTTGCGTT CCTTTTGTTC CTGTCCGTTT ATCAGGACAC GGGCCCCACC TGTCACGTGC CCGAGGCCAC CCAAGCCCAG 002240
002241 CCTGCGGGGC GTTCCCACTG CCTGGATGCC GGCTTGAGTT CTGCGCACGC AGGATTCAGT GTGGGGACGG CCCCTGCCGG 002320
002321 ATAGGCCTAG CCCTGGCCCA GGTGGTGAGC GGTTTGCAGT GTCCGTTCTC ATCCACCTGA TGGGCCCAGA TAAAGGCCCC 002400
002401 CGCTGTCCAG CCTCCCTGGA CGGCCCTCGC GGTCCCTGCA GCCCAAGATG GGACTCAGAC CCTGTGCCCC AGAGCTCCCC 002480
002481 TGCCGCAGAA TGGGGCCCCA GCCGGCCCCG ACCGGGTCCA GGAGCACTGC TCGCCTGTAC ATACTGTTGC CCTAGCCCAC 002560
002561 CTGGTGCCGT GGGAGCCACC CCCAGGTGCT GGGGGCACAG CCCCTCCCCA CTCCGGCCAC GCCCCCACCC ACCCCGCGTG 002640
002641 TTTCTGCCCT GTGACTCCTG GAACCTGCGT CCTCCCCAAA GCCATGGGAG GGGTGTCCTC CTCAGACCAT GCCCCCAGAT 002720
002721 GATTTTTTTA AATAAAGAAA CAAATGCACC TGC
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Predicted Small Protein

Name NONHSAT060386_smProtein_1148:1420
Length 91
Molecular weight 9499.7025
Aromaticity 0.0333333333333
Instability index 40.1188888889
Isoelectric point 8.10833740234
Runs 11
Runs residual 0.0176366843034
Runs probability 0.0476626358979
Amino acid sequence MGVENSGMMKTAGGPPGMGVEDSGTMEGTGHGGGLAPAHLRLSLGIHAAACHLPRQVLSQ
QAHLRGGIWAVWIHPRAHRLPSEHPDYSHR
Secondary structure LLLLLLLEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLHHHHHHLLLHHHHHH
HHHHLLLEEEEEELLLLLLLLLLLLLLLLL
PRMN -
PiMo -