NONHSAT061228
Revision as of 22:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT061228 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
545 nt |
Genomic location |
chr19-:12247721..12251170 |
Exon number |
2 |
Exons |
12247721..12248089,12250995..12251170 |
Genome context |
|
Sequence |
000001 ATTCCAGCTT CTACTTTTGT TGCTATGCAG GTTGTTGTCG GGATACCAGA TTTCCTACTC CGAGAGGCCC CGGGTCCCTC 000080
000081 TGCCACAACT TCTGTCGCTC TGCCGCCTGC ACCGTGACCC GCACTATTCA CGGGAGCCCT AGAGAGGACA CCGGGACACC 000160 000161 CAGAAGCCGG GAAATGgctg gagtgaagtg gcgctctctc agctcactgc aaccgccgct tcccgagttc aagcgattct 000240 000241 cctgcctcag cctcccgagt agctgggatt acaggcacgc acacacccgg ctaatttttg tgttttttag tagagaggga 000320 000321 gtttcaccat gttggccaga ctggtcttga actcctcacc tgaagtgatt ggcctgcctt ggcctcccaa agtgctggga 000400 000401 ttacaggcat gagccactac acacggcttg agtacgggtt tcttctgtta taagaaagtg aaacccataa tgaaaatgca 000480 000481 tggtaaggta acataagaAG TCACGGTAAC AGGCAACTCT AGAATTAATT CATATGGAGA TGATG |
Predicted Small Protein
Name | NONHSAT061228_smProtein_173:349 |
Length | 59 |
Molecular weight | 6827.7853 |
Aromaticity | 0.172413793103 |
Instability index | 72.8879310345 |
Isoelectric point | 9.38055419922 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.0455259180749 |
Amino acid sequence | MAGVKWRSLSSLQPPLPEFKRFSCLSLPSSWDYRHAHTRLIFVFFSREGVSPCWPDWS |
Secondary structure | LLLEEEELLLLLLLLLLLLLEEEELLLLLLLLHHHHLEEEEEEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |