NONHSAT061231
Revision as of 22:47, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT061231 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1627 nt |
Genomic location |
chr19+:12305538..12349423 |
Exon number |
2 |
Exons |
12305538..12305958,12347905..12349423 |
Genome context |
|
Sequence |
000001 TCGACTATCA CCTGACCGTA GTAATATCTC CCGCTACGCG CGTTGTGACC AATGCTGCAT ACAGGAGATG AGGGAGGACG 000080
000081 GCCAGACACC TGGAAGCCGG AAAATGGTGA AAGGCAGGAT TGGGAACCCC ACAGACCGCA GCTCCTCCCA GGAGAACCCC 000160 000161 ACACATGAGT CTGGATCCTC GCCATGATCC TCCCGTGGCC CCCACACAAT CTGGGGAGAC GCGGGGCCGC GGGCACTGCG 000240 000241 CTGCCGAGAG GGCTCCGGAC TGAGGCTGCA GTTGCTGCGC AGGGACGGCT CAGGATGCCC GGGGTCCCGG CTGCTGGCCC 000320 000321 AGCCCCACCC TGTGGCCGAG GGGACCCAGG GACGAGCTGC GCCAGGGAGA CTCGGGTCCG CAGACCCCGG AATCGCTGCT 000400 000401 GACAGGCCCG GGTCCCACCA CAGCAGGTCC CAACCAGCCC CTCCTCCCAC CCGGCCTTGC ACACTCACCA TTTCCCGGCT 000480 000481 CCCAGGTGTC CCGGGTCCTC CCTTGGCTCC GGAGATCAGT GCTGGTCACC ACCGGACAGA AGCTGTGGTG GAGCCACCTC 000560 000561 GGCCTCTGGA AGGCTGAATT CAGTGGGTTA GGGGAACAGG AGCCCCTTAG ACTTGCGGAG CTTGGCCCCA CCCTCCTGGC 000640 000641 GGAGCGCCTG ATTGGATAAT TTACACGACC CCGCCCAGTA CCCCTAGGAT AGGAATCAAG CCCCACCCCC TAGGCCCGGG 000720 000721 TTTCAGGAGA AGCCACGGAA AACTCGGAAG TGTGGAGCAG GATTGACAGG TTCTAGCAAC AGCCCTCCCA CCCCCCCGCC 000800 000801 CAGGCCAGGC TTCCTTCTGG AGCTTGGACG TGACCCCACA CTGGGGACAT TTGCATTTAA GAAAAACTTG GCTCCAGGCT 000880 000881 TTCCACAGTG GGCCCTGGCA TCTTCCTATA CTCACTGGGC CCTTTCTGTT TCTTCCTTCT GGACGGGGGT TCACAAGTGT 000960 000961 GAGCAGGCAG TTCCACACTC CGTGTCCAAT TGAGCCAGTA CCTTTGCTGG AAGCTACTGG GCTGGAACAG GAGGGAGAGC 001040 001041 CCAGATGTCT TCCAGGGATC AGGAATTTGG GATAAGCGGC TGGTGGCATG GCCAAGGCTT CCTCATACCT TATCTCAGTC 001120 001121 TACCCATTTT CAGGGAAGAA AATGAAATAT GCCAACAAGG GAACAAAAAT TAAGTGCATG GAAAAAAGTT ATACTACAGC 001200 001201 AATATTCTGT AAAGAAATCA AAAGGGGCCG GGCGCGATGG CTCACCCTAT AATCCCAGCA CTTTGGGAGG CCAAGGTAGG 001280 001281 AGGATCACCT GAGGTCAGGA GTTTGAGACC GCTCTGGCCA ACATGGTGAA ACCCCATTCT CTACTAAAAA TACAAAAACT 001360 001361 AGGCCAGGCG CGGTAGCTCA CGCCTGTAAT CCTAGCACTT TGGGAGGCCA AGGCGGGCGG ACCACAAGGT CAAGAGATCA 001440 001441 AGACTATCCT GGCCAACATG GTGAAACCCT GTCTCTACTA AAAATACCAA AAAAATCAGC TGGGCGTGGT GGCACGTGCC 001520 001521 TGTAGTCAGA GCAGCTCGGG AGGTTGAGGC AGTAGAATTG CCTGAACCCG GGAGACAGAG GTTGCAGTGA GCCAAGATCA 001600 001601 CACCACTGCA CTCCAGCCTG GCAACAG |
Predicted Small Protein
Name | NONHSAT061231_smProtein_1148:1291 |
Length | 48 |
Molecular weight | 5204.9224 |
Aromaticity | 0.063829787234 |
Instability index | 56.570212766 |
Isoelectric point | 10.7482299805 |
Runs | 6 |
Runs residual | 0.0386170212766 |
Runs probability | 0.0374639345227 |
Amino acid sequence | MPTREQKLSAWKKVILQQYSVKKSKGAGRDGSPYNPSTLGGQGRRIT |
Secondary structure | LLLHHHHHHHHHHHHEEEEEEELLLLLLLLLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |