NONHSAT063735

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT063735

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3844 nt

Genomic location

chr19-:21857296..21861139

Exon number

1

Exons

21857296..21861139

Genome context

Sequence
000001 CCCGGCCCAG CCCCTCCTCA CTCCCCTGGA CTCTTCCACG GTGTCTCCGG GCCCCTGCAC CATCCTGTGT AACTCTCTGA 000080
000081 TGAAAGCGGA GGTGGCAGCA TAAAGATGAT GGGGGAACTG CCCCGCATGC CGAGGAAAGC TCGCCCAGCT GCGCAAAATG 000160
000161 CTCTGATTGA CGTCGGGTTT CTGCGCACCA AGCTGAGCCA TGACCAAGGG TTAGAGCCGA GGCGACCCCG GACGTGGGCG 000240
000241 CTCCATCTGC TGCTGCGGTT CCCCCTGTTC TCGGCTAAAC CGTGGCTGGA ACCGGTGCCC GCCAGAGGTG CAGGAGCCGC 000320
000321 CCCGCGGGCA GAAGGAGGCG GTAGCCGTGG TCCCTGAAAA CCAGGCCCTG CTGACAAATC TCAGACGCCA GGAACAGAAG 000400
000401 AACCAGGAAA AATGCCCGAC AGCTTGAGCC AGATGGACGG ACTGTTGGAA CACCTGAGGG TGAAGCTGCG CGAACTCCTC 000480
000481 AAAGAGGAAC AGCAAAGCAG CCACCAAGAT GGACCAGAAA GATGAACAAA GAAAATTAGC AGCAATCAAA GGCAGATGCT 000560
000561 AAAGCAGTAC AAAACCGTTC ACACAACGAT AGAGACGGAA TTGATGAAGA AGTCTGATAA ATGAATGACA GAGTGAAAGG 000640
000641 ACAGCAGTGA CCATGGTAAG GTGCTGACGA TTCTGGTCCA CTGGATCCCA TCATCCCTAG GACAGTAAAT CTCATCGCAG 000720
000721 TCGCCACTCA GCAAGTTACC ACTGCAGCAT TTCCTGTTTG TTCCAAAATG AATAAAGGTG ATTCTCATCA CAAGGGCAAA 000800
000801 TACAGAGTAG TTTATTATTA TTATTTTTAA CTAAACTGTA GCTGTAGCTG TTTAGTTTAC TTGTTCTAAG TTCTTATAAT 000880
000881 TTTGAAAATA CAGTTGACAC TTGTATGACT TATGAGGTTT TTGATAGTCT AATGTCGTTT GATGTTCAAA GAACAGTATA 000960
000961 TTTTAAATTA AGAAGAATAA ACTGTGTGTA TTTGTTTTAT ATATTTAAGG CTTAGAGGCA CAATGCTTCT GCTTATGATT 001040
001041 TGAAAACTTC AAAGGTTGGT TTTCCATCTG TTCATACACA AAACAGTGTA TCGTGGTGAA ATGTTTGTTT TTTTTAAAGT 001120
001121 GGCAGCCACA GTTCCTGTCT GTCCGGATAT ATTTTGGACT TTTGTATGTT AAGCAGAAGA AAGAAACTTC GTTTTGTTTT 001200
001201 AGGTAATCTA AGATTGTTGT ACGCACACAA AAAAACTTCA CAGATTACTG TAGGGTTCAG CAAACTGTTT ATATAGTGTA 001280
001281 ACATTAGTAT CTCTATTTTC TGATGTCTAG ATTTTTTTTA GAAAAGATTG TTTTCGTTTT TGTTTTTTTA ACAAATGTCT 001360
001361 CCACAAATTC TGGCTTATTT TATAAAATTG CAGAATACTA AAGAACTGGG TGCTTTGCCA TACTATATGA ATACTGGCAC 001440
001441 TCaattaaaa tatcaaatat tttaatcaaa atttagattt aaataatGTC TTGATTTTTC ACTACAGTGA TAGACATTCA 001520
001521 CAAATATTTC ATATATTAAA GCTATCAGTA TTAGGTTTTA CTTAGTAGTA ATATATATAT AAGATCAAGA ATCTGTTCAA 001600
001601 AATGGATATC TTTCATCAAT AATTTGGTGC TTTCAAATAC CCAGAAGTCT TGTTTTAATC ATATTAAGTC TGAGAATAAT 001680
001681 TTACTAATTT CATTTTTGGA ATAATGTGTT CAAAATTTTC CAGTTTAACC TAGTATTGAC TGAAGATGGG TAAACAAATC 001760
001761 GATTTACTTT TCAAATCTCA TAGGCCTATC GTGTTGCTGA AGATGTTTTC AATTCTCCCT TTCAATATTG TTTACAGGAA 001840
001841 TGCAGGTCTA GTCCAATCTG CTCAACCTGT TAATCAGTGT CAGCTGCCAG ATTCAAATTC ATTTTTAGTG TGCCTGTACT 001920
001921 TTTCTTTCCA TAACCTCTGA ATTCATTTCA TTTACTGATT TAAATGTGAT ATAATACAGC TCATACATTT AAAACAAAAC 002000
002001 CAGCAGGTAA AATGAGTTCT GGCTTAGTAT AAAGAAGCTG TTACTGAGTT ACATCATACA GGTGGATGCA GCTCCACAAA 002080
002081 ATTTTAGACA AAAAAAGTTG GACTGAACTA TATTGTGTGT TGCTATGACT TAGCCTCTAG TGCCCTTAAG AATAAAGACA 002160
002161 AATTTCAGCA AATTTATCCA GTTGCTTTCA GTACGTCTAA AGGTAACATA TCAAGAATTC TCATGCTACT GCCTGAGAAA 002240
002241 ACAGATTCTA CTGTTACCTA ATAAATCAAA ATCAACTGGA TGGCATTTTT GTAGCCTTGC ACCACATAAA GAGAAACTGC 002320
002321 AATGTAGGAC TAATAAACGC AGACTCCATC ACAAGGAAAA GGGTAATCCA GAACGTCACT TTCAAAATTT AAGTATTTAA 002400
002401 ACTTTTAGTA GAAAAATGTG GTAAAAGAGT GCTTTTGGTA AGCTTTGTGT AGTTTAACAT CAGCATGAAG TAGAAAAAAT 002480
002481 CTTTAAAAAT GTAAACAAAC AAAACCATAC ACCAAAAAAA CTAATATTCA CCAGTGCATA CATATTGATC TTTGTGTTGG 002560
002561 GAGAGTCTAA AGCAGAACAT TTGGTGAACT TGATAAAATT ATTTTAATCA CATTGGCATA CTGataaaat tatttatatt 002640
002641 tggccaggtg ccggggctca cacctgtaat cccagcactt tgggaggctg aggtgggtgg atcacgaggt caggagttcg 002720
002721 agaccaacct gaacaaatgg tgaaacacca tctctactaa aaatacaaaa attagctggg catggtggct catgcctgta 002800
002801 atcccagcta ctcaggaggc tgaggcagga gaatcccttg aactcaggag tcagagggtg cagtgagctg agatcgcgcc 002880
002881 actgccctcc agcctgggtg gcagagtgag actatgtcat aacaaaaaaa atttatttat atttaatttG ACTAAAACAT 002960
002961 GTTCACATCT TAAAAATACT GCTTTGTACC ATGAATAATA AATGTAAAGT CTTTATCCTC AAACGGATTC TGATTGTCAA 003040
003041 CTCAATACAT ATGGCAACCC ATTTCTCTGG TTTCTCCAAA CTGAAGTCTC ATGAAGGCTC AAATATGGAG TGAGAGGGAC 003120
003121 TCAACAACAG ACCATGAGAA GCAAGAAGGA TGAGGTAGGA TGGTCAGCTC TAAGGCTCAG GGATTCCTGG GGACCCCAAT 003200
003201 ATAATGACGT CAGCTATGAA GCTTACTAAC TGAAAATAAG CATAAGCAGC TGAAAACTCC ATGGCTTCGC TTCGGTGGGA 003280
003281 AGGAGTCTCT GGAATTACAG TCATGCCAAA AGGATTGAGC CAGAATGACA TGTATCTAAA GATTATTAGA GGGGACTGTT 003360
003361 CATAAGCACA TAAACATTTG TTCCAAATAT TATTACAGTA GCAATATCCT TTTCTGTAAT ATCAGCTTCC CCAAGATAGG 003440
003441 GTTGCCATAG ACAAATTAAG ACAAGTGCCT AATATGTTGT AGGTAATTGG TTTCTAAATT TAAAAAACTT GCAATAATTT 003520
003521 CATGAATCTC ATTAAACTCT GTTTGTGTAT AAATCTCACT GAAAGGCAGT ATCCATTAGC TATTTTCCTT AGTCCTTTTG 003600
003601 GGATTTTCTG TTGCTTGATT CCAAACCAAA CTTATTTTAA TCCTAGTTGT TTCTAAATCC CCAGATGTAA TAACAGACAG 003680
003681 CAGAAATGAA CCCAAGTTAC CCCAAACAGT CAACGTCTAA TATATTTTGT TCCCCAAATG AGCCAAAAAC CACACAAGCT 003760
003761 AAAAAACAGT GGGTTTAAAA TTTAACCTAA ATTTAACAGT AGCAGTTTTA CCATATGTAA AAATTGGCAA AGTCATAACT 003840
003841 TAAA
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Predicted Small Protein

Name NONHSAT063735_smProtein_1745:1939
Length 65
Molecular weight 7355.6274
Aromaticity 0.125
Instability index 48.8875
Isoelectric point 9.23748779297
Runs 11
Runs residual 0.02328125
Runs probability 0.0566154389684
Amino acid sequence MGKQIDLLFKSHRPIVLLKMFSILPFNIVYRNAGLVQSAQPVNQCQLPDSNSFLVCLYFS
FHNL
Secondary structure LLLHHHHHHHLLLLLLHHHHHHHLLLEEEEELLLEEEELLLLLLLLLLLLLLEEEEEEEE
EELL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLL
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