NONHSAT064006
Revision as of 22:52, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT064006 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1232 nt |
Genomic location |
chr19+:28284923..28297636 |
Exon number |
2 |
Exons |
28284923..28285030,28296513..28297636 |
Genome context |
|
Sequence |
000001 GCTGGGAGCA GTAGCATCTT AGCTGCTTCC GGCCGCTGGT CGCAGGGCTG CGGGACTACA ATCTTCGCAT GAAATGGAAG 000080
000081 AGAGGGTGGT GCGGATAGCT TGAGGAAGGT CTCGCATCTG GGGCTCGATC TCGTGCAGAG GAGCATTTCC GAAGACACTG 000160 000161 GCCGCTCCCA CAATGGCTCC GAAGAACCCA GCGACCAGCG GGTTCATGAG TTTGTTGGGG CTGTCCACTC GGTACCAGCT 000240 000241 GCGCAGGGAT GTCAGGACAA AGAAACAAGT TGCCTGGTTC CAGCCCTGCT TCAGCACGGG GCCTGTGGGG CCCCGGTAAG 000320 000321 TCCCGGTGTT CCCGCACAAT CTCCTAACCC TGTGGAAGAA TCCCCTGTAC TTGGATTTGG AGAGGTCTGG CCATGGATTA 000400 000401 ACTTCACCTT GATGGTCTCC ATGGGACATA GGACCACCAC GGCCTCGGCC ACGCTAGCTC ACTGGCCGCA CCGCTGCCCG 000480 000481 CCTTGCTGTT CACCAGTCCC TGGGCATCCC GCATCTGGTT GCTGAGGAAC GCCTGACGCC GCCTTGTGGA TGAAGCCGCA 000560 000561 GAGCAGGGAG CTGAGGCTGC GGCCCAGGCC CAGGCTGCCT TGGCTGCGAC TGTGTGCCTG CAGGCCCCAT GCCCGGTATC 000640 000641 CGGTGGATGC GAGTGCTAGT CCAGCTGCAG CTGCATCTTC ACGAACTCGG TGGGGAACGG GATGCAGATT TTTTTTTTCT 000720 000721 Tttccttcct tccttccttc cttccaactt ccttccttcc ttccCCTTTC tttctttctt tttttttttt tttttttttt 000800 000801 gacagaattt tgctcttgtc ccccaggctg gagtgcagtg gcgcgatctt ggctcactac aacctggatt caagcgattc 000880 000881 tcctgcctca gcctcccgag tagctgggat tacaggcatg tgccaccatt cccggctaat ttttttgtct ttttagtaga 000960 000961 gacggtgttt ccccatgttg gtcaggctgg tctcaaacgc ctgactcaga tgatccgccc gcctcggcca cccaaagtgc 001040 001041 tgagattaca ggcttgaacc accgcgcctg gccCTGTGAT GTAGATTTTG ATGCTGCCAG CCAGGCTGCC TGCCGGGATC 001120 001121 GCCTGCCCTG GAGCAGGAGC ATCAGCCGTG CGTTCCAGGA CGCAGGCATG GCATGACCGG CAGGAGGCGG AGTGCCCGGC 001200 001201 GTCTCTTGGG ATCGGAGCCT CCTGAATTCC AC |
Predicted Small Protein
Name | NONHSAT064006_smProtein_701:955 |
Length | 85 |
Molecular weight | 9605.0982 |
Aromaticity | 0.22619047619 |
Instability index | 66.75 |
Isoelectric point | 6.80340576172 |
Runs | 11 |
Runs residual | 0.0030330603579 |
Runs probability | 0.0621878563055 |
Amino acid sequence | MQIFFFFSFLPSFLPTSFLPSPFFLSFFFFFFFDRILLLSPRLECSGAILAHYNLDSSDS PASASRVAGITGMCHHSRLIFLSF |
Secondary structure | LEEEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHLLLLLLL LLHHHHHHHHHHHHLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiii |