NONHSAT064006

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT064006

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1232 nt

Genomic location

chr19+:28284923..28297636

Exon number

2

Exons

28284923..28285030,28296513..28297636

Genome context

Sequence
000001 GCTGGGAGCA GTAGCATCTT AGCTGCTTCC GGCCGCTGGT CGCAGGGCTG CGGGACTACA ATCTTCGCAT GAAATGGAAG 000080
000081 AGAGGGTGGT GCGGATAGCT TGAGGAAGGT CTCGCATCTG GGGCTCGATC TCGTGCAGAG GAGCATTTCC GAAGACACTG 000160
000161 GCCGCTCCCA CAATGGCTCC GAAGAACCCA GCGACCAGCG GGTTCATGAG TTTGTTGGGG CTGTCCACTC GGTACCAGCT 000240
000241 GCGCAGGGAT GTCAGGACAA AGAAACAAGT TGCCTGGTTC CAGCCCTGCT TCAGCACGGG GCCTGTGGGG CCCCGGTAAG 000320
000321 TCCCGGTGTT CCCGCACAAT CTCCTAACCC TGTGGAAGAA TCCCCTGTAC TTGGATTTGG AGAGGTCTGG CCATGGATTA 000400
000401 ACTTCACCTT GATGGTCTCC ATGGGACATA GGACCACCAC GGCCTCGGCC ACGCTAGCTC ACTGGCCGCA CCGCTGCCCG 000480
000481 CCTTGCTGTT CACCAGTCCC TGGGCATCCC GCATCTGGTT GCTGAGGAAC GCCTGACGCC GCCTTGTGGA TGAAGCCGCA 000560
000561 GAGCAGGGAG CTGAGGCTGC GGCCCAGGCC CAGGCTGCCT TGGCTGCGAC TGTGTGCCTG CAGGCCCCAT GCCCGGTATC 000640
000641 CGGTGGATGC GAGTGCTAGT CCAGCTGCAG CTGCATCTTC ACGAACTCGG TGGGGAACGG GATGCAGATT TTTTTTTTCT 000720
000721 Tttccttcct tccttccttc cttccaactt ccttccttcc ttccCCTTTC tttctttctt tttttttttt tttttttttt 000800
000801 gacagaattt tgctcttgtc ccccaggctg gagtgcagtg gcgcgatctt ggctcactac aacctggatt caagcgattc 000880
000881 tcctgcctca gcctcccgag tagctgggat tacaggcatg tgccaccatt cccggctaat ttttttgtct ttttagtaga 000960
000961 gacggtgttt ccccatgttg gtcaggctgg tctcaaacgc ctgactcaga tgatccgccc gcctcggcca cccaaagtgc 001040
001041 tgagattaca ggcttgaacc accgcgcctg gccCTGTGAT GTAGATTTTG ATGCTGCCAG CCAGGCTGCC TGCCGGGATC 001120
001121 GCCTGCCCTG GAGCAGGAGC ATCAGCCGTG CGTTCCAGGA CGCAGGCATG GCATGACCGG CAGGAGGCGG AGTGCCCGGC 001200
001201 GTCTCTTGGG ATCGGAGCCT CCTGAATTCC AC
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Predicted Small Protein

Name NONHSAT064006_smProtein_701:955
Length 85
Molecular weight 9605.0982
Aromaticity 0.22619047619
Instability index 66.75
Isoelectric point 6.80340576172
Runs 11
Runs residual 0.0030330603579
Runs probability 0.0621878563055
Amino acid sequence MQIFFFFSFLPSFLPTSFLPSPFFLSFFFFFFFDRILLLSPRLECSGAILAHYNLDSSDS
PASASRVAGITGMCHHSRLIFLSF
Secondary structure LEEEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHLLLLLLL
LLHHHHHHHHHHHHLLLLEEEEEL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii
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