NONHSAT066144
Revision as of 22:55, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066144 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1390 nt |
Genomic location |
chr19-:38053292..38054681 |
Exon number |
1 |
Exons |
38053292..38054681 |
Genome context |
|
Sequence |
000001 ATTCCACATG TGTGTATGTG GAATATATTC CACATGTGTA TATATTCCAC GTGTATGTAT TCCACATGTA TATATTCCAC 000080
000081 ATATGTATAC ATTCCACGTG TGTATATAGT CCCCATATGT ATACATTCCA CGTGTGTATA TATTCCACAT ATGTATACAT 000160 000161 TCCATGTATG TATGCATATA TGTATTCCAT ATATGTATAT ATTCCATATA CCATATATGT ATATATTCCA CATATGTATT 000240 000241 CCATATATAT ATTCCATATG TATATGTGTG TGTGTATAAA ATATATATTT GCCTTAAATG GAAATATAAA CAAAATTTAC 000320 000321 CAACTACAGT TTTTCCTCAT TTGAATCTAA CCCATTTCTG ATATACTGAA TGGTAAATTT TTAGAGACCC AGATCTCGGA 000400 000401 GGCTACATTC CATTTTTTGG TCTTTTTGTC TTTTTTTTCT TTTTTTTTGA GACAGGGTCT TGCTCTCCTT GTTCAGGCTG 000480 000481 GAGTACAGTG GCACAATCAC AGCTCACTGC AGCCTTGACC TCCTAGGCTC AAGCTATCCT CCAACCTCAG CCTGCCAAGT 000560 000561 AGCTGTCACC ATAGCTGTTC ATCACCATGC CTAGCTCATT TAAAAAAAAA TTTTTTTAGA GATGGGGTCT CACTATGTTT 000640 000641 CCTCATCTGG TCTTAAACTT CTAGGCTCAA GCATCTACCT GCCTCAGCCT CCAGAAGTGC TGGGATTACA AATGTGAGCC 000720 000721 ACCACATCTG GCCCCATTAT TTTATTTTTG GTTTGTATTA TTTTTATTTG GCCCCATTAT TTTAAATAGG AAAAACAGTA 000800 000801 TGTTTTCAGT CCATTAAAAA ATCCTAACCA AATTTAATTT GAATTCAACT TAATTTAAGC CACCTAAATG ACCTCTATCA 000880 000881 GGGATTTCTG AATAATGTAA AACACTCAAA AGCCAGTTAA CAGTTAATTA CCAGATATGT TTGTGCATGC AGTGATTTTG 000960 000961 AAAAATATAA TACATGAATT ATGCTTTCCT TCTATGCTTT AAGGAACAGA TACTATAGTG ACAATAAATG TAATACATTA 001040 001041 GTACATAATG GACGCAAATG ACAGATAAAA ACAGCTTTAA ATAATTTGAA CTTGTTAATT AGAATGTTGT TGAATGAGGG 001120 001121 CTGATGGTCA GAAATTAATG ATGGTGAGAA GAGGTTAATG GTGTTCAGTG AGTGAAGGTG AGTTAGAATA ATATATTGGA 001200 001201 GCAGCAATCA ATCAATGCCT ACAGTTCTTC TATGATTCCA AGCATCTGGT GCACAGAACT CAAGACCTCA AAATTGAGTT 001280 001281 ACTGTATACA AAGCTGTTCA TAGAAAAACA AATGTTACCA AGAAATACTT ACCTTTTCTA TATGCAGTGT TATCTCTTGT 001360 001361 CTTCTAATAC ATTATCTTTT TTGGTTTCAA |
Predicted Small Protein
Name | NONHSAT066144_smProtein_65:343 |
Length | 93 |
Molecular weight | 11388.5753 |
Aromaticity | 0.271739130435 |
Instability index | 50.3891304348 |
Isoelectric point | 8.17913818359 |
Runs | 15 |
Runs residual | 0.0278385986863 |
Runs probability | 0.0253194370842 |
Amino acid sequence | MYIFHICIHSTCVYSPHMYTFHVCIYSTYVYIPCMYAYMYSIYVYIPYTIYVYIPHMYSI YIFHMYMCVCIKYIFALNGNINKIYQLQFFLI |
Secondary structure | LEEEEEEEELLEEELLLEEEEEEEEEEEEEEELHHHHHEEEEEEEEEEEEEEEELLLLEE HHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHH HHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTT TTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii |