NONHSAT066869
Revision as of 22:59, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066869 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1871 nt |
Genomic location |
chr19+:46713305..46718362 |
Exon number |
4 |
Exons |
46713305..46713526,46715373..46715491,46716047..46716267,46717054..46718362 |
Genome context |
|
Sequence |
000001 GTTCAGCTAA AAATAAAGCC CTTTATCAGT TTGGTCACTG GAAGGACTTG TTCCCTTCTT GTTGATGATC AGAAACCTTA 000080
000081 GCAGGAACTA ATTCTCAAGT GTCTGCCTTA ACAGAAAAGC CACAAAGAAA CATGGTAAGA GCGTGGCAGA TAACATCCAC 000160 000161 GGTGCTATCG GGAGGTGACA ggtgactgac ctcagccttg gtgttcaaga agattccaga agCACGTCCT AATCTGTGTC 000240 000241 CTGGAAAACA ACACTCTACC CCACAGCAAC AAGGCATGGA GGCCAATGGA GAAGACAGGG AGATGGTGCT GGAAGCAGGG 000320 000321 TCTGCTCTTC CCCTGGGGAA Gcactgcatc accagtgtct gacacaaagc ctgggacatg tgggcttcca agtggacctc 000400 000401 tcctggataa atgaCCATTA ATGAAACAGA GAAGGAGTTG AAGAGCCCCC AGAGGAGTGT GAGTCCCAGG GGTCCCGCCA 000480 000481 GCTCCACTCC CACCTTCCAA ACCTGTGAAA GTCAGGTGCC TGAGTCGCAC AGTCTCTCCC ACCCGAATGC CATGAGCTGC 000560 000561 AGCTGTCTTG GCCGCTTTCT GTTTGTGACT CTCCCTGCCT CCACTCCCCC CACCACCCCA TGAAATGATC TCATTTGGTC 000640 000641 ATTTAAACGG AAAACTAAAA AGTTTTAAGT GACTCTAGGA GAGCAGGAGA GAGGCAGGTC TCCCAGCTCA GACCCCGCCC 000720 000721 CGGGACGGCC CCACGGAAGA TGCACATCTG GATGTAGGCG CTCAAGGCAC CGCGCGTGCG CCGAGTGGCC TTGCTCAGCT 000800 000801 CCGTCCTTCT GAAACCCGGA ATCCTCATGT GTCTGGGTCC CGCCCCATCC TGGCCTCCTA CACCACTGGT CCAGATCCTC 000880 000881 CACCTTCCCC CAACGCGAGG TATTGACATC AAAGCATCAC CTCATCTGGC ACAAGAATCT GAAACACAGA CCGCACCTTA 000960 000961 CACCAACGTA GTGAATCCCT CCTTGGACCT GAGTTCAACA AGCCCAGAGT CGGGGCTCTG GGTTCCCGCC CAAATGCCAC 001040 001041 GCATGCACAC AGATGGCACC TGGCGTCTCC TCAAAGGGAC AGGAATCCCG GGCTTCCCAG AATCACCAGG TCGATTTAAA 001120 001121 TGGCATCAGA TGAACTGGAA AAGAATGAAA GTGCTATTGC CTAAAGTGAT GAAATTTTCA GAGGATGTAT CGGTCCTGTC 001200 001201 TGGTGGACAG ACGGCCACCA GAGGGAATGA ACCAGTCTTC TCTGAACATC CATGAGGATG AAGAACAGTC ACTGAGGTGA 001280 001281 CGgtaccaag tcaccggcca cctcccaggg atcctctcat ccggtcctca cagcagcgct gcatggtcgg acctcatcac 001360 001361 ccacattcca ccaagaggaa gctgaagccc agggCCTTCA TCCACTCATG TCCTCCAGAC CCCTGGCACC CATCCTGGGC 001440 001441 CCCACCCCAT CATCCAGGCC TTGGGCCTTC GACCTGGGGA GAGTCCCTGT CTCCTCCATG AGCCGTCCAG GGCCTGAAGA 001520 001521 GGTATCCAAT AAACAAGAAA GCAGAACACA AAGAGCTGTG ATGGAGTGGA TCTTATGTAG TAAGAATAAA ATTATTTTGA 001600 001601 GAAATTACTG GGTCATGTAT TTACCCACAG AAAAACAGAA GCAAacacac gcgtgcgcgc acacacacac acacacacca 001680 001681 cacaGGCTGT CACGTGTCCT CAGCACAAAG TGCCTTGAGA AAGGCCATTG CTGGCCCCAC ACTTATCCTG ACTGTGATCT 001760 001761 TGCTGTGATC AGCACATCCC ATCAGTGTGG CAACAGGTGT GGCCAGAGTG GGAACCAGGC CTTTTCTTCA GATTTGCTCT 001840 001841 TTGTTCCTGA ATAGCCACCG TCAGAACAGA C |
Predicted Small Protein
Name | NONHSAT066869_smProtein_410:622 |
Length | 71 |
Molecular weight | 7518.3901 |
Aromaticity | 0.0428571428571 |
Instability index | 74.9271428571 |
Isoelectric point | 6.69915771484 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0443678973092 |
Amino acid sequence | MTINETEKELKSPQRSVSPRGPASSTPTFQTCESQVPESHSLSHPNAMSCSCLGRFLFVT LPASTPPTTP |
Secondary structure | LLLLLLHHHLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLEELLLLLEEEEE LLLLLLLLLL |
PRMN | - |
PiMo | - |