NONHSAT067420
Revision as of 23:02, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT067420 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1010 nt |
Genomic location |
chr19+:51702111..51704705 |
Exon number |
3 |
Exons |
51702111..51702576,51702792..51703110,51704481..51704705 |
Genome context |
|
Sequence |
000001 ATGCTGCTGC TGCCCCTGCT GTGGGCAGTG GGGAGAGGGG CCGGGGGAGC TGGACTTCAC TGACCTTCAT TCTCCACAGG 000080
000081 GGACATGGTT CAGGAGGCAA TATTCTGGCT GGAAGTGCCT GAGCCCATGC GTCTTTGTGC CCTGCTCCAT CTTCTCCTCA 000160 000161 AAAAACAGCT GCAATGATTC TACCGCAGCT GTGGTTACTG GTTCTGAGAT GGGGCCCGTA TATACCAGCA CACTCCAGTG 000240 000241 TCCACAAACA ACCCAGATCA CAACATTCAG GGGGAGACCC AGGGCCGATT CCACCTCAGT GGAGACCCCC GGACCAACAC 000320 000321 CTGCTCCCTG GACATCACAG AAGCACAGAG GCGGGGATGC AGGGACGCAC TTGTACAGGG TGGAGAGAGG GCTTATGCAA 000400 000401 GATATAATTA CAGTGGGAAC CAGCTCTCTG TGCACGTGGG GAATCAGGGC AAGAAAGAAC ACACTGATCC AGGGGACCCT 000480 000481 AGAATCTGGA CATTCCAGGA ACATAACCTG TAAGAGGAAG ACCTCCCCCC GCCCACTTTC TCTTGGATCA ATGTGGTCCC 000560 000561 CACCTCCCTG GGAAAGAATC CTCACTCCTT GGTGCTCACC TTACCCCAGG GTTGCACAGC TTCACCTGAG CCCTTCCCCA 000640 000641 GAGCTGGTGC AACCACGGAG AGAGCCATCC CAATCAATCT GTCCTGAAAG CACCTGGCCA GGCCCCTGGG TCCTGGAGTT 000720 000721 CACTGGGTTT TGGGAGAAGG GGGCGGAGAA TCTGAGTTAC TGGGGGACTC TTCTTGGGGA CCTCTGAGGG CAGTCCCTAC 000800 000801 ACCTGGTCTG TGATGCTGAT GGCAGCCCCC CTGCCAGGCT GTGCTGGTCC CAGGGCAGCC TGACCATGAT CCCCTCCCAG 000880 000881 CTCTTGCATC CCCAGGTCCT GGAGCTGCCC CAGGTGGTTT CAGGAGACGA AGGAGAATTC ACCTGCCGGG CATAGGCCCT 000960 000961 GCTGGGCTCC CACCCCATCT CCCTGAGCCT GGCTGTGCAT GGGGAGTGTT |
Predicted Small Protein
Name | NONHSAT067420_smProtein_173:406 |
Length | 78 |
Molecular weight | 8686.9146 |
Aromaticity | 0.0649350649351 |
Instability index | 73.6623376623 |
Isoelectric point | 9.83428955078 |
Runs | 7 |
Runs residual | 0.0451722190853 |
Runs probability | 0.0333106215459 |
Amino acid sequence | MILPQLWLLVLRWGPYIPAHSSVHKQPRSQHSGGDPGPIPPQWRPPDQHLLPGHHRSTEA GMQGRTCTGWREGLCKI |
Secondary structure | LLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLEELLLLLLLLEEL |
PRMN | - |
PiMo | - |