NONHSAT067422
Revision as of 23:02, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT067422 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4728 nt |
Genomic location |
chr19+:51729222..51747115 |
Exon number |
6 |
Exons |
51729222..51729337,51738412..51738508,51738850..51738931,51739078..51742993,51746298..51746363,51746665..51747115 |
Genome context |
|
Sequence |
000001 CTCGGTGCTC ATAATCACCC CACGGCCCCA GGACCACGGC ACCAACCTGA CCTGTCAGGT GAAGTTCGCT GGAGCTGGTG 000080
000081 TGACTACGGA GAGAACCATC CAGCTCAACG TCACCTGGAA ACAAGAGACC AGAGCAGGAG TGGTTCATGG GGCCATTGGA 000160 000161 GGAGCTGGTG TTACAGCCCT GCTCGCTCTT TGTCTCTGCC TCATCTTCTT CATAGTGAAG ACCCACAGGA GGAAAGCAGC 000240 000241 CAGGACAGCA GTGGGCAGGA ATGACACCCA CCCTACCACA GGGTCAGCCT CCCCGgtacg ttgaggccaa cagatcagga 000320 000321 gatgatggcc attgaaaaga tagtttcttg gccgggcaca gtgtttcaca cctgcaatcc cagcaccttt ggaggccaag 000400 000401 gcgggcggat cacgaggtca ggagattgag actatcctgg ctaacatggt gaaaccccgt ctctactaaa aatacaaaaa 000480 000481 attagccaga tgtggtggct ggcgcctgta gtcccagcta cttgggaggc tgaggcagga gaatggtatg aacccgggag 000560 000561 gcagagcttg tagtgagccg acatagcacc actgcactcc agcctgggtg acagagagag actctgtccc aaaaagaaaa 000640 000641 aaaaaatagt ttcttattca ccgttcccga gagggcacac cacaccatgc aaggccatat ggagaagcac cagggtcagt 000720 000721 caggaagcag agggagcaag gagaaaatgg gacaagagcc ttcactgtgg ctttcatgga aaagaatggg caagacaggg 000800 000801 taagcaagct aggcaggttt aggattggct acttagaaca atttcagcag actctggggt ataggagttg tctctagttg 000880 000881 tctggtacat ggccctgggt ttattaagga ggattgtggt ctggagtgta agagctcaat aaaggatcca gctggtagtg 000960 000961 tgggctttag attgactggt ttgcacatga aaggtgcact tgtatgcaag tcctttatta gctctagaaa tctactatcc 001040 001041 ttgggaaagg cagtctctca agggtcagta atgccccaga tgtcaaaaca tcagaaacac TTGGTTGACA CACCCCTAAA 001120 001121 CATACTTCTC CTGATGGGTT CTCCATCTCG CTGATGGCAC TCTTGTCCCC ATTACCCAAC CAGAGACATG GCCCCCTCCT 001200 001201 GTCCCAGTCC TCCATCTCTT CCTGTGCCAG TATGCTACGA TGCATGTCTG AGCTTCCTCT GAACACGGCT TAACACAACC 001280 001281 ACTCCTGAGC CGAGAGCCCC TCTTACTCCT TATTCTGCTG CAGCCTCACC TCCCATTTCT CCTCTCCAGA ACATTAGCAT 001360 001361 CACCTCCCTA AAAGGTCATT GTCCCATCAT TCCCAAGTTT GAAATGCACT GCTTCTCTAC ACTCCTGAAA GATTGGCATT 001440 001441 CCAACAACTT GGTCTGGCAT TTGGAGCAGG AAAACCAGAG TCCCCTTCAG TGCTATGCTC CCCCAACATT AGCCACTCAA 001520 001521 TCACCTCAAG CAGGGCAAGC TTTCTCATCT CAGAATCATT GCTGGGCTGT CCCCTCCTCC TCATATGCCT AATAGCTACC 001600 001601 TGCCCAACTC CAGTGCATCC TTCAAGCTCT Gatttttttt ttaatttatt taaCTCTGAC TAAAGTGAAC ACCACAGTAA 001680 001681 AGTTTTTGAA CACAGGGTCA ACCAGCACCC ATTCATTCTG AAATATCTAT ATAATCCCAT TTGCCAATTG CTCTAGGTCC 001760 001761 TTGTGCCATT CTGTATTTTT ATAAACACAC AGTTTACAAA Tataaaatat tcctcctatc gggggcttaa catttattgg 001840 001841 ggaaagggat gaaaataatg aacaaataag cagtgcaaat atacatgaaa taggcatgaa ataagtgcta tggcaggaaa 001920 001921 tgaaatggga gaacggattg gacagtcctg ggggccaaag aatggccttt gggcaaacac ctgcagaaag aaagtgagta 002000 002001 cagtatgagc agtagagaat catcaaggaa gcagcaagta ccatggctct gaggccggaa cacatctgat gttttagaga 002080 002081 aacaaagtag gacagtgtgg ataaggcaga gttacgtgtt gggggtggag tgtggactga acaatggtag gtaggaaatg 002160 002161 aggttgaaga gacataggag ctgcaaatat tgcaggatcc taagtccatc atagttattg atgcgtttag agcagaagag 002240 002241 tgacatgaac tgacactcat tttagtggga gtcactctgg ctgctctgtg agaaactcta gtatgtagta tagaagagaa 002320 002321 gataccagaa tagaagatac acagataatc aagccaagag atgactgact cagacttagt cccaagtaag aataatgaat 002400 002401 ctgatgtgga gaaattgggt tccggataca tcttgaaggt ggagtcaaca gtatttgcaa gtggagtgat ggagtgcatg 002480 002481 caaggcatga gcaaagatag ctcacgggct ctgctcgata agtgtctcag atgtcatagg tgggtccaca gatatcatag 002560 002561 atgtcatgga tgtccaagaa gaccccatag atgtcataga tgtctataga tgccaatgat gatgttcatg tggttaactc 002640 002641 agaattcaaa cttaaaaaat caaattgcca atgattaaaa ttgccatcct tgaaggagaa gtctattttc aagtgtatat 002720 002721 caaacattat tttggttacc gtaagtttga ggtgcctctg agacatccat gtggagatga caagtagcag gcaagtgtct 002800 002801 ggagctcaga agagggctcc acgtgggaga cacagaggtt gggagcttcc ctatcaacat ccaataatcg atgaatctac 002880 002881 aaagaagaga aggggtccac agacacagcc ctggaaccct ccagcattta atgttaggga gatgaggtgt aaatggtgag 002960 002961 aaagctgaga atgaatagga gccaatgacc aggaaattgc aggctgtagt gttggtggcc aagggaagat ggggcttcat 003040 003041 ggaggagagg ttggtcattt gtttcaaatg ctggtaagtc tggtaagatg gaatctgaga aatggctatt tgaatgtagc 003120 003121 taagtggtat gacagcaaag cagatctgat ttttctgctg gaggaagatc tcttgactag agagagttca agagagaatg 003200 003201 ggaggagaag aggcagaaac tgtgagttga aggactcttt tgagaaacac tgccccaaat ctagaaccaa gaaatgggCC 003280 003281 TGCACCAGCA AATGGTTGTA CCCTGTAGAC TTGCCATTTC TCCAGCATCT GCTCCTGTGT CTCTTATGAT ACCATGTTCC 003360 003361 CTGTTTGTGT AGGGCTTTGC ACCACTTGAA CTAACTGCAT TCCCATAGCT TCCCCTACCA CACCATGAGC TCCACAAGGA 003440 003441 AAAGCCTGGG TTTTATTAGA CCTCCATCAT TCTACTCTCT CCTGTTCATC TGCACACTGT CACAATTTGC AATTACCAGT 003520 003521 CTGTTTCTGT CTTCATCCCC TGCAGTACTG GAAATCACAG GGCCCCTGCT CTGCTCTGCT CCCTCCTGAG GATCCAGTGC 003600 003601 CCAGCACATA GGAGGTCCCA Gagacctggg accgagttca gggtcaacag atgtgtgact ttggaaatta cctaagctct 003680 003681 ctgagaccta gtttcctggt ctgtaaaatg gattaaaata atagatgccA AAGATGATGT CAGTGTAGCT GCCCAGAATT 003760 003761 TTTCCACATT AGTCTCTGTG AGTATTCAAG AGAATTGCGA ATCAATCAAT ACGTGCTACA TGTGTTAGAT AATGAATAAG 003840 003841 TAGAGCCTTA ATTAATTAAC ATTTGATGAA AGAATGAAAG AGTGAATAAA TGTTCTGTCA GAGTCAAATT TACTTCATTG 003920 003921 ACCCTCTTTG CCTTCTCCTG GTCCCCCTCC TCACTGCCCT GCTCTAACCC CCTTCTTTCC TCTCCATAAG AAACACCAGA 004000 004001 AGAAGTCCAA GTTACATGGC CCCACTGAAA CCTCAAGCTG TTCAGGTGCC GCCCCTACTG TGGAGATGGA TGAGGAGCTG 004080 004081 CATTATGCTT CCCTCAACTT TCATGGGATG AATCCTTCCA AGGACACCTC CACCGAATAC TCAGAGGTCA GGACCCAGTG 004160 004161 AGGAACCCAC AAGAGCATCA GGCTCAGCTA GAAGATCCAC ATCCTCTACA GATCCCAATT TAGGTTCCTC TGCCTGTTCC 004240 004241 TCTAAGAGGC CACTGTTTGA ACCACTTCCT GAATCTGtag ccaaaaattg gaagcaaccc aaatgtccat caactaatga 004320 004321 aggaataaac aaaatctggt acattcctgc aatgcatatc attcagacat aaagatgggc cgaagtacag atacatgcta 004400 004401 caacgtgtat gaacttcgaa agcatcacac caagtgaaag aagccagaca ctaaagatca cgtaccatat gattccattg 004480 004481 atatgaaatg tctagaatag gaaatacatt tctggaggca gaaagcaggt cggcggttgc caggggcttc gaggagggca 004560 004561 gtgactgctt agtgagtaca tgctttcctt ttggggcaat gaaaatgttt agaaccaaac agaggttgtg gttacacaac 004640 004641 gttgtgtatg tactgaatgc caccgagttg ttcactttaa catgttcatt gtatgtaacg tgattttaca tcaataaaaa 004720 004721 aaaATAAT |
Predicted Small Protein
Name | NONHSAT067422_smProtein_2360:2608 |
Length | 83 |
Molecular weight | 9446.8339 |
Aromaticity | 0.0487804878049 |
Instability index | 74.2695121951 |
Isoelectric point | 8.97601318359 |
Runs | 8 |
Runs residual | 0.0383407243163 |
Runs probability | 0.0405405405405 |
Amino acid sequence | MTDSDLVPSKNNESDVEKLGSGYILKVESTVFASGVMECMQGMSKDSSRALLDKCLRCHR WVHRYHRCHGCPRRPHRCHRCL |
Secondary structure | LLLLLLLLLLLLHHHHHHLLLLEEEEEEEEEEEEEHHHHHHLLLLLLHHHHHHHHHHHHH HHHHHHLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |