NONHSAT067546
Revision as of 23:02, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT067546 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1720 nt |
Genomic location |
chr19-:52897580..52901010 |
Exon number |
2 |
Exons |
52897580..52899003,52900715..52901010 |
Genome context |
|
Sequence |
000001 GGGCCGGGAC AAAGCCTGGG CCGGGCCTGC GCTTCCGTTC GCTTGACTGG CTGCGCTTGT TTTCAGGGTT TTGGTCTGAA 000080
000081 AACGGATCTT ACCTGCGCAG AGCAAAATCG GTTGTAGATT ATATCCACGA AAATTCCTTC TATTAAAATG AATTTCAAGT 000160 000161 CCCACCTACC CTGGAAGCag aaagagagag aagagagaga gtaaagagaa agagaaaaga aagagaagtt gaaaaagaga 000240 000241 aagaaaacca agaaagaaag agaaaaaAAC CGAAAATAAA TGGACAAGAA AGAAAAgcca acgtgccatg catccctgga 000320 000321 gcatgaaacc caggatgggc cgccttccag cctcccacag ctgtgatgca agttgaacac atacagagag actgcatctg 000400 000401 cactgggtgg ttttcctgag ccttggggag cagaatgcat gaatcccagg tatctgccga tctgtatgta acaaattcac 000480 000481 ttcatgtaac ttactgtgtg tccgtgagat tatctctcac tcaactcaga cacattggca accagtgtgc agtgaacctg 000560 000561 cttcacaAgc aaggatgtgg agaaactatt ttcgtacatt ttgtgggaat ctgaaatact gcggtcagta tggaaagcag 000640 000641 tatcatggga aacttcctca actcaagatc acctaccaat ccttacagaa tcagaatcat catacaaact ggtgaaagca 000720 000721 tagtttcccc tagaggttgg gatgagggca agaatgtccc ctcttatcac tactattcca cacaatatga aaggttccag 000800 000801 ccagtgaaat aaagGAaaaa gaaataaaag tgacaggctg ggtgtggtgt ctgaggcctg taatcacagt gctttgggag 000880 000881 gctgaggaag gagggtggcc tgaggacagg aCAAAAAAAA TAGTGTACCA ACAGAAAATA TGTTGGTTGT GCAGGCTAAT 000960 000961 ACCTTTCCCA AAGGAAGGTA GCTACatccc tatgacctgt gttactggat atatcaaaag ggagtttgca aatgtggtct 001040 001041 agataaggat ctttagatag acatcctgaa ttatatggtc aaagtgatag aatcacaagg ttcaatatca gaagggtgca 001120 001121 ggtggatgcg aagggacaga gacagtggtg atgtgttgaa aatagaggga taaagagatt ttttttctca cctttaaaga 001200 001201 tggaggaagt ggaccatgag tcaaaggatg taagtggcct ctggaaccta caaagggtaa ggaaacaaat tctcccctgg 001280 001281 agattaatga agaatcacag aactatggac ccatattaga tatgtgactt acagaattat aaaagaataa atttttcttg 001360 001361 ttttaagcca atcactgtgt atagcaatag gaaactgatg aaatgatttt atgtagaaaa ttccaaaaaa atctacaaaa 001440 001441 atctctagaa caagaaaaat gtaaaggtag caaagtataa ggtcaaccta caaaaatatc gtatatttca tcagccaggc 001520 001521 atggtggctc gtgcctgtaa tcccagcact ttgggaggcc aaggcaggca gatcactcaa gctcaggagt ttgagaccag 001600 001601 gctgggtaac atggtgaaac cccatctcta caaaacacaa aaatttaaca ggccatggtg gcacatgcct gcagtgccag 001680 001681 ctactgggga agctgaggtg ggaggatgac ttaagcctgc |
Predicted Small Protein
Name | NONHSAT067546_smProtein_1520:1708 |
Length | 63 |
Molecular weight | 6880.7886 |
Aromaticity | 0.0806451612903 |
Instability index | 43.1919354839 |
Isoelectric point | 9.62127685547 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0402265010108 |
Amino acid sequence | MVARACNPSTLGGQGRQITQAQEFETRLGNMVKPHLYKTQKFNRPWWHMPAVPATGEAEV GG |
Secondary structure | LEEEEELLLLLLLLLLEELHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEE LL |
PRMN | - |
PiMo | - |