NONHSAT067917
Revision as of 23:05, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT067917 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
11153 nt |
Genomic location |
chr19-:54948912..54960064 |
Exon number |
1 |
Exons |
54948912..54960064 |
Genome context |
|
Sequence |
000001 cgtgatctct gctcactgca acctccgcct cctgggttca aacaattctg cctcagcctc cggagtagct gggattacag 000080
000081 gcgcgcgcca ctatgcccgg ctaatttttg tgtttttagt aaagacgggg tttcaccatg tcggccaggc tgttctcgaa 000160 000161 ctcctgacct cgtgatccct ccgtctcggc ttcccaaagt gctgggatta cgggcgtgag ccaccgtgcc cggccGCAGC 000240 000241 CTTGTTTTGA CTGAGTCAGT GGGAGCCATT ACTGTTCCTA AATGTAAACT GGCGTGACAG GAGTTCCGGG ATTGTCCACA 000320 000321 GCACGGTGAT GTGGAAGCCC TGGGGAGAGA ATGATAAAGA AAGGGGATGA GGAACAGCTC CACCCGGAAG AGCGGGCTTC 000400 000401 CCTAGCAAAT GAATCTGGAA GGGCGCAGGG GAGGGGGCAC GGCGAGTTCA GATGGACCGA GGCTGGAAGC TGACGCGGTT 000480 000481 GGAGGGGGAT GGGTGTAGCT GTTGGCAGTG GCGCTGGGGT GGAAGTGTGT GGGGTCACAG ATGTGTAAGG GTGGGCGCGG 000560 000561 AGCAGACCCC CGAAGGTCCC TGAGGTCAGG CTGAGGCATT GGACCAAATC CGTACATAGG CATTTCTCTG AACTGCGCGC 000640 000641 CACCTTTTGA GTGCCATCTG TTTCCGTCCA GGACTCTGAT ACAACTATCC AGTCCGCTGC AGGGACCGGT CACTGCGTCA 000720 000721 CAGTAAGTGG TGGGATTTAA GAGGCAGTTT TCCTCCTCAT GTTCTACCAT TATGAACGTC TAGCTTGAAA AATACATACC 000800 000801 ATTTTCATAA CTACGTATTA TTTTGTTAGT GCTAGCATAG TAGATCTTTT TCCGTTATTT TACTCTGTGG GGGGGGGGGG 000880 000881 GTTTGttttg tttttgtttt tgttttcttt ttgGTACtaa gctttttgtt ctggaataat tttggattta ttcaaaacgt 000960 000961 tgcaaagacc gggcgcgctg gctcacgcct gtaatcccaa cactttggga ggccgagatg ggtggatcac ctggggtcag 001040 001041 gagttcaaga tcagcctggc caacatggtg aagtcccgtc tctactaaaa atacagaaat tagctgggcg tggtggcgcg 001120 001121 tgcacctgta atcccggcta ctcgggaggc tgaggcagga gaatcgcttg aacccaggag gccaaggttg cagtgagccg 001200 001201 aggttacacc attgcactcc agcctgggca acaagagtga aattcttgtc tcaaaaaaaa aaaaaagaaa agttgcaaag 001280 001281 atcatacgca gtccaccatg ttttatgctc agtttcttct gatgctgtca tcacaagcac caacaaaagt ggtttgttgt 001360 001361 agatactgac atgatgcatt actgtaacta aaacccagac tttactggga tttcaccacc ttttcctcca atgttttctt 001440 001441 tacatgccag ggtacaagcc aggacccacg ttccatttag cttcctttta cctgttgtat ttagggtggg tttcttgtag 001520 001521 atagcatgta gttggatctt gctttttttt gcccaagcga acagtctctg ccttttaaaa gaggtgttta taactgtact 001600 001601 tttatttttt atgtcttatt CTTTAGCATT CTGTACACAG ACACAGCGAT AAAATGAAAT GACTGGAACT TAAATGTGAA 001680 001681 AACTCTTTAC AAGTAAGCCC ACAATTAGAT ACATTTATCT TACATGTCAG GGAAAAAAAT TATGTAAACA GGACAAATTA 001760 001761 TATCACAAAA GAATCCCAAA GTAGAAAAAA TACCTAAGAA ATGTGTCTAA CCATGAAAAG TACTGTTCTC TTGGTGTCTT 001840 001841 CACATCGTGT CTTCTGTGTA CTTAAGTACA AAACATTGTT GCCTCTGATT AATGCACCCT GTACTTATTT TTCTGTTGTC 001920 001921 CAGTTACATA TTTGGTTGGT TCCAGGGCTA TGTTCATGTA GCCATCCAGG CAAACCAGCA CCCCTCCCTT AATCCACTTC 002000 002001 AGAATTTTAC CCCAACTGTC TGATGATGTG CTCTAAGAAG TCACTAGGGG ATTGCTTTTC TTAAAAAATC TAttattatt 002080 002081 attatttttt gagacggctc tgtcgcccag gctggagtgc agtagcacga tctcagctca ctgcaacctt tgcctcccag 002160 002161 gttcaagcaa ttctctttac aggcgtgcac caccacaccc agctaatttt tgtattttta gtgaagacgg ggtttcacag 002240 002241 tatctggaat tccggacctc aggtgacccg cccgcctctg cctcccaaag tgccgggatt acaggcatga gccactgcgc 002320 002321 ctggccAGTA GGGGGTTGCT TCTGAAAACT TATTTTAATA ATCTTGGGTA ggccaggcgc ggtggctcat gcgtgtgatc 002400 002401 ctagcacttt gggaggccga ggcgtgtgga tcacctgagg tcaggagttc aagaccagcc tggccaacat ggcgaaaccc 002480 002481 cgtctctact aaaaatacag aaaaattagc cgggcatggt ggcgcatgcc tgtaatccca gttactcatg aggctgaggc 002560 002561 aggagaatcg ctagaaccct gggggtggag gttgcagtga gcccagatca tgccattgca ctccagcctg ggagacagag 002640 002641 cgaaactctg tttcaaaaaa taataaTCTt ggggggcagg aaacctaagt cataatcccg gctcttttac ttaaccagcc 002720 002721 gtatgacttg gaaaactcgt ttcccttctc tcggctccag attcctcatc tTGCAGCTGG GATCCAGAGC TCTCACTCCA 002800 002801 GGAGCCCAGT CACAGCAAAA ACCAAAACTG TACttttttt ttttttttga gacagggttt ctcattctgt cacccaggct 002880 002881 ggagtgcaat gatgtgatct ctgtctcagc ccacagcagc ttcaacctcc caggctcaag tgatcctcct gcctcagcTA 002960 002961 CGCAGTGTAT GGTATTTTGT TACAACAACC AGAATGTAGT AAGAcattta ttgaaggata tcttggttcc ttccaagttt 003040 003041 ttggcagtga taaagaaagc tgccataaac gtgcacgtgc agatttcttt gtgggcagaa gttttcaacc catctgtgta 003120 003121 aatactgggg agcagtgttg ctggttcata ttctaagagt atgtttagga ttatgagaga ccaccacact gtcctccaaa 003200 003201 gtagctgtac cattctgcat tgccagcacc aatgaagaag ggtttctgtt gctccacatt tctgccagca tttggtggtg 003280 003281 ccagcatttt ggatttggca ttctaatagg tatgtagtgg tgtcttgttt tttttttgtt tttttgagac agagtctcac 003360 003361 tctgtcttcc aggctagagt gcagtggcat ggtctcggct cactgcaacc tccgcctcct gggttcaagc gattctcctg 003440 003441 cctcagcctc ccgagtagct gggactacag gcgtgcgcca ccacgcccag ctaatttttg tatttttagt agaaacgggg 003520 003521 tttcaccatg ttggccagga tgatctcgat ctcttgacct cgtgatccac ctgccttggc cttccaaagt gctgggatta 003600 003601 caggtgtgag cccccgcgcc cggccagtgg tgtcttgttt taatggacgg ttccctaatg acatacggtg aacatctttt 003680 003681 cctgtgttta tttgccatct gtattagggt tctccagagg gccagaacta acaggatata tgtatatatt gaaagggagt 003760 003761 atattaggga gaactggctg acaggatcat caggcaaagt cccactatag tccatctgca agctgaggaa ggaagaagcc 003840 003841 agtcacgtct caaagtccaa aagcctcaaa agtagggaag ccaacggcgc agccttcagt ctgtggcgga aggcctaaga 003920 003921 gtccccgaca aaccactggt ggaagttcaa gagtccaaag gccaaagaac ctggagtcta atctccaaag acaggaagta 004000 004001 tccagcacag gagaaagatg aaagccagaa gactcagcaa gccagcccct cccaccttct gcgctgactg gatggtgccc 004080 004081 acccacactg agagtgggtc tccctctccc cgtccactca ctcaagtgtc agcctccctg gcaacaccct cacagacaca 004160 004161 cccagaaaca atcctttttt tttttttttt tttttttttt tttttttttt ttgagaccga gtctcactct gtcacccagg 004240 004241 ttggagtgca gtggcaccat ctcggctcac tccaacctcc gcctcccggg ttcaagcaat tcttctgcct cagcctcccg 004320 004321 agtagctggg actacaggca cgtgccatca tgctggctaa tttttgtatt tttagtacag ggtttcacca tattggccag 004400 004401 gctggtctca aattcctgcc cgtcttggcc tcccaaagtg ctgggattac aggtgtaagc caccatgcct ggccCCTTTT 004480 004481 cctatttttt aatcagattg ttttcctgtt aactgagttt taagagccct ttgtaaatct tggatagcag tccttcatga 004560 004561 gataggtctc ttgcaaatag tttctcccag gctgcagctt ttctcattat attaaaaatg tttttcaaag agcagagggt 004640 004641 tttgttttgt tttgtttttt gagatggagt ctcgctctgt cgcccagtct ggagtgcagt ggcgtgatct cggctcactg 004720 004721 caagctccgc ctcccgggtt cacgccattc tcctgcctca gcctcctgag tagctgggac tacaggcacc tgccaccaca 004800 004801 cctggctaat tttttgtatt tttagtagag atggggcttc accgtgttag ccaggatggt ctcgatctcc tgacctcgtg 004880 004881 atccgcccgc ttcggcctcc caaagagctg ggattacagg cgtgagccac cacgcctggc ctagcagagg ggttttttta 004960 004961 ttattatttt aataaagtca agcttgtaag tttctttcat ggatcatgcc tttgatgttg tatcaaaaaa attatcacgg 005040 005041 ctgggcgtgg tggctcacag ctgtcatccc agtattttgg gaagccgagg tgagtggatc acttgaggcc aggagtttga 005120 005121 gaccagcctg gccaacgtgg caaaacccca tctctactaa aaatacaaaa attagccggg cgtggtggcg cacacctgta 005200 005201 attccagcta ctcaggaggc tgaggcatga gaatcacttg aacccaggag gcagaggttg cagtgagcca agattctgcc 005280 005281 agtgcactcc agcctgggcg acagagtgag actcttgtct caaaaaaaaa aattcacaaa acccagtcat gtaggttttc 005360 005361 tcctatgtta tcttctagga gttttataga tttgcattta acattcagct ctatgatcca ttttgagtta atttttgtga 005440 005441 agagactaag gtctgtgtat agatttgatt tatttatttt tggcatgttg atgtccagtt gttctagcac catttgtgga 005520 005521 gaGAAGTTTG GAAGTTTGAG CATTTTTTAT GATACCtttt tttttttttt agacggagtc tcactgtcat gcaggctgga 005600 005601 gtgcagtggc acagtctcga ctcactgcag cctactcctc ccaggttcaa gcagttctac tgcctcagcc tcccaagtag 005680 005681 ctgggattac aggcgtgcac caccacaccc agctcctttt tgcattttta gtagagacag ggtttcacta tattggctag 005760 005761 gctggtctca aactcctgac ctcgggatct gcctgccttg gcctcccaaa gtgctgggat tacaggtgtg agccaccacg 005840 005841 cccagccTTA TGATACTGTT CTATCTCTGC TCTgtgccca ccaccacacc cagctaattt ttgtattttt tggtagagac 005920 005921 ggggtttcac catgttggcc aggctggtct cgaactcctg acctcaggtg atacgcctgc ctcagcctcc caaaatgctg 006000 006001 ggattacagg tgtgagccac tgcgcctggc cTTGTCTTCA Cttttgtttt tttggttttt tttttgagag ggagtcttgc 006080 006081 tctgtcgccc agtctggagt gcagtggcgc gatctcggct cactgcaagc tccgcctccc gggttcacgc cattctcctg 006160 006161 cctcagccgc ccgagtagct gggaatacag gcgtccacca ccacgcccgg ctaatttttt gtatttttag tagagacggg 006240 006241 gtttcactgt gttagccagg atggtctcga tctcctgacc ttgtgatccg cccgcctctg cctcccaaag tgctgggatt 006320 006321 acaggtgtga gccaccgtgc ccggccCACT TTTGAAAAAC AGTTTCAGTG AGtatcgaat tctaggttga ctactttttt 006400 006401 cttttgctac tttaagaatt ttcttacact gctttctcac attgtttcca gtgagaaatc tggtgtcatc ctaatttttg 006480 006481 ttcctctgtt tataaaatct ttttgttttt catctggctg ttgtcaagat tttctctttg ttactggtct taagaaattt 006560 006561 gattatgatg tatcttggtt tatctttgtg tttcttctgc ttggggtgtg ttgagtttct tgtgtctttg gttttatagt 006640 006641 ttgtatcaaa tttgggaaat ttggggttat tatttcttta aacactctct ctgttccttt ctttctctct ccttatgggc 006720 006721 ctccagttac acatatatta aaatgtccca cagctcacca gtgttctttt cattaaaaaa aaatatattc attccttctg 006800 006801 gggcagggca tggtggctca tgcctgtaat cccagcactt tgggaggcca aggcagtagg atcacttgag cccaggagtt 006880 006881 tgagaccacc ctgggcaaca tggtgagacc tcatctctac agaaaatttt taaagattag ccaaacatgg tggtgtgcgc 006960 006961 ctgtagtccc agctactcga gaggctaaag tgggaggatc gcttgagctg gagaggttga ggctgcagtg agtcatgatc 007040 007041 acgccagtgc actccagcct aggtgacaga gtgagaccct gtctaaaaag taaaaaaaaa aaaatcattt ttttaaatgt 007120 007121 ttcatttgga cagtttctaa tgttgtcttc cagatttttt tttttttcct gcaatgtcta atctgctgtt ctagggctgg 007200 007201 gtgcagtggc tcgcacctgt aatcccagca ctttgggagg ccgaggctgg cagatcattt gaggtcagga gtttgagacc 007280 007281 agcctggcca acatggtgaa agcccgtctc tactaaaaat acaaaaatta gctggatgtg gtggcaggtg cctgtagtct 007360 007361 cagctacttg ggaggctgag gcatgagaat tgcttgaacc tgggaggtgg aagttgcagt gagcctagat catgccactg 007440 007441 cactacagcc tgggcaacag agcaagactc tcccccaaaa aacaaaaatc tgctgttcca gccagtacat tatttatttc 007520 007521 agacattgta atttctatct gttgatatcc agtttgagtt tttttatatc ttccgtatct gtaaagaact tttggaacgt 007600 007601 atggagtaca gtataatagt tgttctaatg ttcttaccta ctaattctaa ctcctgggtc cgtttcagtt gaatgatttt 007680 007681 tatcctcatg atgtgcccta ttttcctgct ttttgcatat ttggtgactt tgttgttgga tactagacaa tatcagtatt 007760 007761 accttgtcga gcactcgtta cttttgtatg cctataaata ttcttgagct ttgtttgaga atgcagtcac cttacttgga 007840 007841 agcagcttga tcctttcagg ttttgctttt aagattcctc aggcaggacc agaacagtgt ttaacaggtt agggctgctt 007920 007921 attccccacg gctgatgtaa gaccctctcc gtgttctacc cagtgttcct tcagttatga ggttcttctg gcaggaacag 008000 008001 cgccttgtca aggcctgtgt gagtccccag aactcaggcg ctatttgctt cagtccctcc aggtggttct ttccctggcA 008080 008081 TTCTAGTctg cagtaacaga ggaccatgga ctggtggctc aaaaacaaca aacacttatt tctcacagtt ctggaggctg 008160 008161 gaagtccaag atAAtttatt tttattttta tttatttatt ttttgagatg gagtctcgct ctgctgccca ggctggagtg 008240 008241 caatggcgcg atcttggctc actgcaacct tcgcctccca ggttcaagag attcccctgc ctcaggctcc cgagtagctg 008320 008321 ggactacagg cacccaccac tacacccggc gaatttgtat atatttagta gagacagggt ttcaccatgt tggcaaagct 008400 008401 ggtctcgaac acctgagttc aggtgatcta cccacctcgg tctcccaaag tgctgggatt acaggcgtga gccatcgcac 008480 008481 ccggccCATA ACTTCATTCT CAAAACAAAG CTCAAGAACA AAGCTCAgac tccctgcttt gtctcctctg ctcacggagt 008560 008561 cctcccagct ccgcctcagt cttccctccc tgtcccgtgg tctagaaact tgcaacagga cccagcggca attttagggc 008640 008641 ttgccttgat gtttcccgtt cctcagggat cactttcttg gtagagtctt gaccactgtt gttttcttgt atttactcta 008720 008721 tttttggggg gtcaagtcca gtctctgtga ctccatcctg gtcgcagtgg aagcccccAT AGGTAACATT CTAAAAATAA 008800 008801 CACTGGATTT TCCTTTTGTA AAGTTTGGGT AAAATGCCtt tttttttttt tttttttttt ttgagacgga gtcttgctct 008880 008881 gtcgcccagg ctggagtgca gtggcgcgat ctcggctcac tgcaagctcc gcatcccggg ttcaggtgat tctcctgcct 008960 008961 cagcctcctg agtagctggg attgcaggcg cccgccacca tgcccagcta atttttgtgt ttagtagaga tggggtttca 009040 009041 ccgtgttggc caggctggtc tcaaactcct gacctcaggt gatcgcctgc cccagcctcc cacagtgctg ggattacagg 009120 009121 cgtgagccag ggtgcccggc cAACTTCTTG TTGAGAGATC ACCCCCAGGC TCATTGGCAT GGGAGATCAA GCAGCTGAGT 009200 009201 CTCAAGGTAC TTTGCAGCCG CCCAACAGCC AGCGGATGCC TGTGCTTGGG AAATGGGCTC AGGGGCACTA GAGGGCAGTG 009280 009281 TTTGAGAGGA AAGAAGTCAG CATAGCAGCA GGGCCGGGCC TGGGGCAGAC AGCCCACATG GTTAGGAAAA AGTGAGTGAA 009360 009361 CGCATGTGGC CCCCAGAACC CCTCCCTGAA ATTGCAGTTG ATTTTTATTC CCACCGTCAG GCCCACATAT CTAAAGCTTC 009440 009441 CTCTGAACGC TCCTTGCAGT ACACAAAATA GAAATGATTG ACAGGCACAG AGCAGCAGCA GGCCCCACGC TGTACACCAG 009520 009521 CATCTGGCAC TGTGggtcac caagcaccaa ctcgatcccc tcggagccag gtgtgtgttg agattcagga tttttcagtt 009600 009601 gcaaaggcaa tatgatctct actccacagg gcacacggca ccctcagtgc tcagcacagc agtgtgcagc agcctggtta 009680 009681 acttttctgc agggaagtat gtgaacgttc acaccaagcg tgtcagtcat gtctgtaagt catctcccac caacacaggt 009760 009761 caggttttcc tgcccaatga gcttggggat ggcttgactt tggagctctt tggatctgtg gattttggaa ttttggattt 009840 009841 ctgatacccg tttgatcaaa gaggcaaccg aggtctaacg ggtcaagtga ctttcccata tccgtgaagg tcatgaaaag 009920 009921 cagggccagg atggtggcct ggggtgcctt gaatgataag ctgggccctt cactgtgcag gcccctctCC TTCAGTCCAC 010000 010001 TCTGCCACTG CTGTCTGCCA CACCCTGCTC TGATAGCTCC TCTCTGCCAG GCTTTTCCCT CACATCCTCA ACTCAGCCAA 010080 010081 GAGCTGGTTT CTTCCAGAGA GCCCTGCTGT GCAGTCAGTT ATTGGACTTC TCTTTTTGTG CATGTTTGTT TTCAGGGTTT 010160 010161 AGCTGATCAA AGTGGTATCG TTGTAACAGG CAGCTCTAAA TAGAAGTCTT CAGAAGCCTG TGTGTCTTtt tctgtaaatc 010240 010241 aattcccaaa agcaggattg ttggggcatg gggtgtatgc agttttgatc tgatcacata caagcgcatt tttttttttt 010320 010321 ttcaagggat ggtggcagct cacagcctca ggagaagtgt tttgagtgcc tgttcctcta ggtcctcgcc cgcccaggac 010400 010401 atcaccactc ttgttaattt cattgtgtct aggtagtgaa aaagtgtagt ttctcattct ttcaaattgc atttcccaat 010480 010481 tattagagtt tgaatctttt tgtctgttta ctgatgttgg aatttttatt gagtattcaa ctcaattgat tacttttaaa 010560 010561 tgggttgtct ttttcttagt ttatgaaagc ttttgtagat tATATCTTTT AAGAATAACA TTTCTGCATC ATAACTGTTA 010640 010641 acatacacac acacacacac acacacacac acacacacac acgcacgcac acactcacTG TTCCCCAGTC TGTCAATTTG 010720 010721 CCATTTGACT TTACGGTATG TTTTTCAATC TATAATTTGC CAACTAAGCT ATCTTTTCCT TTCTGGTTTT ATGATCTCCT 010800 010801 GCTTAAACTC CTCCCTCCCC ATTTTCCCTA CCCAGATACA TGACATGCAG ACAATATACA AATATTCTCC TAATTTCTCT 010880 010881 GGtttgtttt gttttgtttt gtttttttct gagatggagt ctcacttgat ctcccaggct ggagtacagt ggtgcaacct 010960 010961 ccacctcccg ggttcaagca attctcctgc ctcagcctcc cgagtagctg ggcttacaga cctgtgccac catgcccagc 011040 011041 taattttttt tttctttaag tagagacggg gtttcaccat gttggccact ctgctctcaa actcctggcc tcaagggatc 011120 011121 cacccacctt ggcctctcaa aatgctggga tta |
Predicted Small Protein
Name | NONHSAT067917_smProtein_10790:11062 |
Length | 91 |
Molecular weight | 10104.5571 |
Aromaticity | 0.144444444444 |
Instability index | 46.7933333333 |
Isoelectric point | 6.47357177734 |
Runs | 14 |
Runs residual | 0.01569664903 |
Runs probability | 0.0462500315441 |
Amino acid sequence | MISCLNSSLPIFPTQIHDMQTIYKYSPNFSGLFCFVLFFSEMESHLISQAGVQWCNLHLP GSSNSPASASRVAGLTDLCHHAQLIFFFFK |
Secondary structure | LEEELLLLLLLLLLLLLLHHHHEEELLLLLEEEEEEEEEHHHHHHHHHHHHHHHHHLLLL LLLLLHHHHHHHHLHHHHHHHHHHHHHEEL |
PRMN | - |
PiMo | - |