NONHSAT069181
Revision as of 23:11, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069181 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1170 nt |
Genomic location |
chr2+:11739038..11740905 |
Exon number |
2 |
Exons |
11739038..11739069,11739768..11740905 |
Genome context |
|
Sequence |
000001 TGTATGTGGA TGTTCCCGGG GGCTGAGGGT ACTCCTGAGT AGCTGGGACT ACAGGCGCCT GCCACCACAC CTGGCTAATT 000080
000081 TTTTGTATTT TTAGTAGAGA CAGGGTTTCA CCGTGTTAGC CAGGATGGTC TCGATCTCCT GACCTCGTGA TCCGCCCGCC 000160 000161 TCGGCCTCCC AAAGTGCTGG GATTACAGGC GTGAGCCACC GCACCCGGCT GATGCCTGCC CTTCTTAAGG GGTGATTTGA 000240 000241 CTCACTCAGT TAAAATGAAC ATAAACCCAG ATGAATTTCA GATGGGCCAA GCCAAGCGCC TGGCAGGATT TCTGGTGGTT 000320 000321 TACCGGGATT GGTCATCTCC GTGAGACTGG CCTAGGGGTT GTACCTTCAG ACATTTCCAC TGATGTAGAT GAGGAAGGAG 000400 000401 GGGGCTCCTG GGCCAGGTCG TGGAGAAAGC CTTTGATTGT CGCAGATCCA CAGATAGCTA GTTAGGCTGG TCAGGACATG 000480 000481 AAGGACCTCG TAAAGGGTTT ACAATCCAGA ATCCATGTGT GGGCTTGGGG GAAATCGGAA CATTCCGAAA TTATAGAAAG 000560 000561 AGCTGTATTG TGAATATTCA TTTTGGGAAT AGGTTTCTCA GAGTGGCCTC CTGCCATCCA AAGGGTTAAG CACTGATTTT 000640 000641 TTTTTTTAAT CCCCTAAACT TACAGGAGAG AATGCAAAGG CCTTTGTCCC ACGGAAAAGT GCAGAGCTGG GCCTGTCTCC 000720 000721 TAGACCCCTT GTCCAAAATG CTTCCCAATC CTTTCCTGCT GCCTTTTAAA CTGACTATAG AATTTACTCT TTTACATCTT 000800 000801 TTCTGGATCA TTTCAAGGTC AGAAGGACTG TGTAAGGAGA TAAGTACACA ATCAGATGGG GCCAAAGAGG AACAAATGAT 000880 000881 TCATGGAACA TCCCCAGGGT CATATCACTG TCCGATTGGG ATAGAAGGAG TGTGTGTCTT GTAAGAAATC CTCTCTGACT 000960 000961 ACCGTCCCAC GCCAGACACA TTTTTCCTAA GTAACGAATC TCAGGAGAGC CCCTGACAGC TACCTGAAGT CCAGCCTTTT 001040 001041 TTATTTTCTC TATTCTTAGT CAGGGGCAGA GCCATAATCT TTAGTCGTTG GTAAAGTCAG GGGTTAGTTA TAAATTTATT 001120 001121 CAACTGCTTC ACCTTGCAAA ATTAGAAAAC AATATAGTAA TTCCACTGAT |
Predicted Small Protein
Name | NONHSAT069181_smProtein_671:943 |
Length | 91 |
Molecular weight | 10051.709 |
Aromaticity | 0.0777777777778 |
Instability index | 63.4533333333 |
Isoelectric point | 6.38616943359 |
Runs | 16 |
Runs residual | 0.0379188712522 |
Runs probability | 0.0465079049639 |
Amino acid sequence | MQRPLSHGKVQSWACLLDPLSKMLPNPFLLPFKLTIEFTLLHLFWIISRSEGLCKEISTQ SDGAKEEQMIHGTSPGSYHCPIGIEGVCVL |
Secondary structure | LLLLLLLLLLHHHHHHLLLHHHLLLLLLLLLLEEEHHHHHHHHHHEEELLLLLLEEEEEL LLLLHHHHHEELLLLLLLLLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo oooooooooooooooooooooooooooooo |