NONHSAT069781
Revision as of 23:14, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT069781 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1647 nt |
Genomic location |
chr2-:27714768..27718029 |
Exon number |
5 |
Exons |
27714768..27715345,27716256..27716345,27716797..27717333,27717414..27717570,27717745..27718029 |
Genome context |
|
Sequence |
000001 CCGCTGCAGG GGCGGGCGGA GGCCGCCGCA CTGCCTCCCG CACCGGGGAC CCAGGCCAGC GTCCGGGCAA CGCCCCCTGC 000080
000081 TCCCGGACAG ACTCCGTGGC CCGCTCGAGC CCTGGGGGCT CCGCAGAccc gcgcccgctc cgcccgcagc tcggccccgc 000160 000161 gctgcccgcg tcgccgggcc cgcgccgggA TGGGGTAGGG GCAGCGCCAC CGAGTCGGGC GATGGGCCGC CCTCTGGGCA 000240 000241 CCGAGCAGCC CCCCGAGGCC TGACCAACCG CGAGGACCGG CGGAGGAGCC CCGCCTggat gtcaagcgga tgccaagcgg 000320 000321 atgccaCAGT TCCCCCCCCA GCGGACTCCG TGGGGACATG GCTTCGCTGG TGCCCCTTTC CCCATATCTA AGCCCCACGG 000400 000401 TCCTCCTGCT GGTCAGCTGT GACCTGGGCT TCGTGCGAGC AGACCGGCCT CCCTCTCCTG TGAATGTGAC GGTCACTCAC 000480 000481 CTCAGAGCCA ACTCGGCCAC TGTGTCCTGG GACGTCCCAG AAGGCAACAT CGTCATTGGC TACTCCATTT CCCAGCAAGT 000560 000561 ATGAATCACC CTTCTGCTCC CCCAACCTGT GTCCTTGGAT TTCGGCACAT TTCTTCACTT AAGTGGGGGG GATCTGGAAG 000640 000641 CTGGCGTATC CTGGCTCAGG CTGCCCTTTT CACGCTACTC CCCCGGAGTG CTTGGATGTT GAAGAGTCTC TGGTTGAGCC 000720 000721 TTGTGGCCTG GCACTGGGGT GAGGCTGTCC TCCTCTCCCC TCATCTCCCT GCAGCGGCAG AATGGCCCCG GGCAGCGTGT 000800 000801 GATTCGGGAG GTGAACACCA CCACCCGGGC CTGTGCCCTC TGGGGCCTGG CTGAAGACAG TGACTACACA GTGCAGGTCA 000880 000881 GGAGCATCGG CCTTCGGGGA GAGAGTCCCC CAGGGCCCCG GGTGCACTTC CGAACTCTCA AGGGTTCTGA CCGGCTACCT 000960 000961 TCAAACAGTT CAAGCCCAGG TGACATCACA GTGGAAGGTC TGGATGGAGA GCGGCCACTG CAGACTGGGG AAGTGGTCAT 001040 001041 CATTGTGGTG GTGTTGCTCA TGTGGGCTGA AAAAGTCACC ATCTATCAAC ACCATCGACG TTTGAGTGAA GAAACACACC 001120 001121 CAGAAGAGAG ATGCACTAAC AACTGGGGAT AGGGATGGGG TCAGGGGGAG CCCAAGATGG TGATCTGCCC GAGACTCCCA 001200 001201 GAGGGTAATG CCACTCCCAC AATCTCAGGC CTGGTACCCA TCCTCTTTCC ACTGTGAGCA GAGCCAGAAG GTAGGTCTGT 001280 001281 TCAGAGTCTG TGCCCCTGGA CCTGGGGAGT GGATATCAGA TGGGATATCT CCTTCCATTC CCCGGTCCAG GGGAGAGTCA 001360 001361 CTAGTTGTAC CCTACTCCAT TAGGTCCCAA ATGGGGGCCC CATTTCACCT GTATCAGGAC TCTGAGCATC CCCAGCTGCC 001440 001441 CCACATCTTG CCTCTGGCCC TCAGAGAGGG GTGTTTCTGT GGGTACTCCT CTTACCCCAG CAAATAAAAG GAATTGTCTG 001520 001521 ACCCTAGAGG CAGATGCTGC ACTGCACTAC TCCAATGTCT TCCATGGAGC CTCAGGTGCT CCCCCTCTCA CCTGGCAGCC 001600 001601 CCTTCAGCTG CTAGTGATAT CACTTGTTGG ACATTTTTCC AATAAAG |
Predicted Small Protein
Name | NONHSAT069781_smProtein_560:853 |
Length | 98 |
Molecular weight | 10462.0294 |
Aromaticity | 0.0927835051546 |
Instability index | 51.9907216495 |
Isoelectric point | 8.66326904297 |
Runs | 13 |
Runs residual | 0.00248186330661 |
Runs probability | 0.0528039351569 |
Amino acid sequence | MNHPSAPPTCVLGFRHISSLKWGGSGSWRILAQAALFTLLPRSAWMLKSLWLSLVAWHWG EAVLLSPHLPAAAEWPRAACDSGGEHHHPGLCPLGPG |
Secondary structure | LLLLLLLLLEEELLEEEELLLLLLLHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHH HHHHLLLLLHHHHHLHHHHHHLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooo ooooooooooooooooooooooooooooooooooooo |