NONHSAT069986
Revision as of 23:15, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT069986 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1794 nt |
Genomic location |
chr2+:32904014..33005264 |
Exon number |
5 |
Exons |
32904014..32904081,32919584..32919804,32977111..32977213,32980634..32980694,33003924..33005264 |
Genome context |
|
Sequence |
000001 ATTTCATTTT TTTCCTGGTA AATTACTTCC TCTGGTATGG TCTTGCCTTG GATTGTTTAT GTTGAAACTA ACATTGTAAG 000080
000081 ATCCATCTCT ATTAAAAAAA ATAAGAAATT ATTAGTGACT TTAAAAAAGT AATGAAATAT TACTTTGGGC ATAATTATAT 000160 000161 TTCTGTCTTT ATATGTTCTG TTTATGTTTT TAGCAACACA AAATTTGAAT GTAAGATTCC TATTTCTTTT TTTTTTTTTT 000240 000241 TTTCCACAAG GTTTTGCTCT GTTGCCCAAG CTGAAGTGCA CTGGTATGAA TTATCACTGT GGCCATGCTG ATTGCAAATA 000320 000321 ACTATGCTCA TAATGCTTCC AGGTTCAGTG CTATCAGCAA GTCTCTCCCA CCCTGGGTTC TAACCACCCC CGACCTTGGA 000400 000401 AAGAGAGGGA GAGGGAGACG GTGGAAAGAG AGGGAGAGGG AGACCGTGGG GAGCAGTAGT AGAGTTGCTG GATCGTATGG 000480 000481 TAGCTCTATA TTCAGAATTT TGAGGATCTG CCAGACTGTT TTCCAAAGTA CCATTTTAGG CCGGGTGTGG TGGCTCACGC 000560 000561 CTGTAATCCC AACACTTTGG GAGGCCAAGG CCGGTGGATC ACTTGTGGCC AGGAGTTCAA GACCAGCCTG GCCAACATGG 000640 000641 TAAAACCCCA TGTCTCCTAA AAATATAAAA ATTAGCTGGG CGTGATGACG CATGCCGTGG TCCCAGCTAC TCAGGAGGCT 000720 000721 GAGGCGGGAG AATCACTTGA ACCTGGGAGG CGGAGGTCGC AGTGAGCAGA GATTGCGCCA CCTTACTCCA GCCTGGGTGA 000800 000801 CAGAGCAAGA TTCTGTCTCA AAAAAAAAAC AAACAAATAA AAAACAAAGT ACCATTAGTC CCACTAGCAA TGTATGAGGG 000880 000881 TTCCAGTTTC TCAACATCCT TGACAACACT TGTTACTAGC TGTCTTTTTT ATTATATCTG TTCTAGTGGG TGGCATCTCA 000960 000961 TTGTGGTTCA ATTTGCATGT TTTGGATGGC TAATGATGTT GAGCATCTTT TCACATGCTT CTTGGCCATT CGTATATCCT 001040 001041 CTTTGGAAAT GTCTATTCAC ATCCTTACCC ATTTTTAAAA TTGGGTCATG TATCCTTTTA TCATTGAGTT GTAAGAGTTC 001120 001121 TTTCTATATT CTAGCTACAA GTCCCTTGTC AGACAAATGA TTTGCAAATA TTTTCTCCCA TTCTGTTAAG TTTTTTTTTT 001200 001201 TTCTCTCTAT TGATTGTGCA CTTTAAAGCA CAAAAGCCTA ATCTTGATGA GGTCCAACTT ACCTGTTTTT TCTTTTGTTG 001280 001281 CTCATACTTT TGGTACAATA TCTAAGAATC CATTGCCAAA TCCAAAGTCA CAAAGATGTA CTCCTATCTT TTCTGCTAGG 001360 001361 AGTTTTATAG TTTTAACTCT TTCATTAAGG TCTAGGGACC ATTTTAAGTT AATTTTATTT ATGATATAAG GAAGGGGTCC 001440 001441 AACTTCATTC TTTTACATGT AGATATCCAG TTGTCTCAAA ACTTTGTTGA AAAGACTATT CTTTTCCTAT TAATAGTCTT 001520 001521 GTCACTCTGG TCAAAAATCA GTTTACTGTA AATGTAAGTG GTCAAAAATT AATTGACTGT AATGTAAGGA TGTATTTATG 001600 001601 GTCCATCAAT CACATTTCAT TGACTGTATG TCACATTTCA TTGACTATAG GTCTGTGCAT ATTCCACTGT CTTGTTTACA 001680 001681 GAAACTTTGT AGTAAGTTTT GAAAATGCTG TGAGTACTCC AACTTTGTTC TTCCTTTACA AGATAGTTTT GGCTATTCAG 001760 001761 CATTCCTTGA ATTTTCCTAT GGGATTTTTA GCTT |
Predicted Small Protein
Name | NONHSAT069986_smProtein_869:1159 |
Length | 97 |
Molecular weight | 10851.777 |
Aromaticity | 0.1875 |
Instability index | 60.1533333333 |
Isoelectric point | 8.25042724609 |
Runs | 15 |
Runs residual | 0.022014604811 |
Runs probability | 0.0577047635872 |
Amino acid sequence | MYEGSSFSTSLTTLVTSCLFYYICSSGWHLIVVQFACFGWLMMLSIFSHASWPFVYPLWK CLFTSLPIFKIGSCILLSLSCKSSFYILATSPLSDK |
Secondary structure | LLLLLLLLLHHHHHHHHHHEEEEELLLLEEEEHHHHHHHHHHHHHHHHHLLLLLHHHHHH HHHHLLLEEEELLEEEEEELLLLLEEEEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooT TTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii |