NONHSAT070410
Revision as of 23:17, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070410 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
676 nt |
Genomic location |
chr2+:44429085..44459860 |
Exon number |
4 |
Exons |
44429085..44429184,44445106..44445217,44445619..44445676,44459455..44459860 |
Genome context |
|
Sequence |
000001 GAGTAATGAG GAGCTCTGTG AATATGTTAA ATCTAGGCTT GAGGTATCTG ATGACCTGGA AAATGTGTGC AATTGGGTAG 000080
000081 TGGACACTTG TTTACACAAG AGATTATGGA GAAGTCTGGC GAGGAAGGAA TGCCTGATCT TGCCCATGTC ATGCGCATCT 000160 000161 TGTCTGCAGA AAATATCCCA AATTTGCCTC CTGGGGGAGG TCTTGCTGGC AAGCGTAATG TTATTGAAGC TGTTTATAGT 000240 000241 AGACTGAATC CACATAGAGA AAGTGATGGG GGTGCTGGAG ATCTAGAAGA CCCATGGTAG CCTTAAAAAC CTTCTAAAAT 000320 000321 GCTTTTGATT CTGAAAATTG GGGGAAAAAA CTTTTAATCA CAATTTTCTT CAATACAAGG GGAAAATATT CTTGCGGATT 000400 000401 CCCAACGTTT TGTGATATGA GCAGAAAATC ATTAGCATTT CCCATCATTT GTTCATATTT GTGTTTTCTG ACAGTTGCCA 000480 000481 CTTGTAGCAT TGCCTGTACT ACAGTATTTT TTGCCAACCT CAGGCATACT CGTTACATCT GTATTGAACT TTCGGCCCTA 000560 000561 GAAACCAGTG GAGTTATTTC ACCACAAATC AACAATGTGC CTGAGGTGCA TGGGAAATAT AGTTAGCTAT ACTCTGAAAA 000640 000641 TACATTATGT TTTTTTTCTT TAAACAAAAC ACACAA |
Predicted Small Protein
Name | NONHSAT070410_smProtein_416:625 |
Length | 70 |
Molecular weight | 7630.8832 |
Aromaticity | 0.101449275362 |
Instability index | 54.4 |
Isoelectric point | 8.36273193359 |
Runs | 11 |
Runs residual | 0.0200889654183 |
Runs probability | 0.0539336127572 |
Amino acid sequence | MSRKSLAFPIICSYLCFLTVATCSIACTTVFFANLRHTRYICIELSALETSGVISPQINN VPEVHGKYS |
Secondary structure | LLLLLLLLLLHHHHHHEEEEEHHHHLLLLLEELLLLLLEEEEEEEEEEELLLLELLLLLL LLLLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooo ooooooooo |