NONHSAT070643
Revision as of 23:18, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT070643 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
490 nt |
Genomic location |
chr2-:50724809..50734078 |
Exon number |
2 |
Exons |
50724809..50724852,50733633..50734078 |
Genome context |
|
Sequence |
000001 TGACTGTGCC TATTTATGAC AGCAGGTTAA TTCACTTGTT ATGGATCAAT GCGTAGGATT AAAGATTCTT AAATGGTCAC 000080
000081 ACCTGAATGT TTGTAAAAGT TGTCATTTTC CTTGCTTGCT ATGACTCTAA TGGGCTTGAA AATTGGTCCA GCCCGCCTCT 000160 000161 TCTCTGTTTC ctttctctcc ctcctctctc tctttcttcc tttcttcttt ctctcctctc tctccctcac cttcccccct 000240 000241 tgtctctttc tctcactctc tGTGAGGTTC ATTTGCTTGA CTGATTCTGA GTGTCCATAA TGACTGTTTG GCATATTCTA 000320 000321 CAGGCAAAGG TCCCGAGACT CTTTTTGCTG GCTATAACCT CAATGATAAC GAGTGGCACA CAGTGCGTGT AGTTCGGCGT 000400 000401 GGAAAAAGTT TAAAGTTAAC AGTGGATGAC CAACAGGCCA TGACAGGTCA AATGGCAGGT GATCATACTA GGCTGGAGTT 000480 000481 CCATAACATA |
Predicted Small Protein
Name | NONHSAT070643_smProtein_86:283 |
Length | 66 |
Molecular weight | 7155.5006 |
Aromaticity | 0.0923076923077 |
Instability index | 48.02 |
Isoelectric point | 4.86383056641 |
Runs | 9 |
Runs residual | 0.0118269230769 |
Runs probability | 0.0750161926633 |
Amino acid sequence | MFVKVVIFLACYDSNGLENWSSPPLLCFLSLPPLSLSSFLLSLLSLPHLPPLSLSLTLCE VHLLD |
Secondary structure | LEEEEEEEEEEELLLLLLLLLLLLEEEELLLLLLLHHHHHHHHHLLLLLLLLLLLLLLEE LLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo ooooo |