NONHSAT071016
Revision as of 23:20, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071016 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
overlapping(S) |
Length |
932 nt |
Genomic location |
chr2-:62692511..62743267 |
Exon number |
8 |
Exons |
62692511..62692862,62692955..62693030,62694245..62694341,62705592..62705650,62709992..62710115,62712041..62712204,62742534..62742572,62743247..62743267 |
Genome context |
|
Sequence |
000001 GGGACTGTAA ACTAGTTCAA CAACTTCTGT CAACACTGAC CAAGGGAAAA AAAAAAAAAG GCTACTCAGG AGGCTAGGGT 000080
000081 GGGAGGATTC CTTGAGCCTG GGAGGCGGAG GTTGCAGTAA GCTGAGATCA TGCCATTGCT CTCCAGCCTG GGTGACAGGT 000160 000161 GAAACCCTGT CTCAAAAAAC AAAAAAATTA TGAATTAGTT GGGAAAGCCA TGACTGCTCT TCATTCTGCT CCCCATGCAT 000240 000241 AAGGAATCTA CATTTTGGGA TCCCTTACAA TACTCCTCTT CTGATACCAA TTTGTTTATT AGTCTCTTTT TAGCAACTGA 000320 000321 CGAAACTCCA ACCCAAACTA GCTTCAGCGA GGGTGTCCAT CACATCCACG TGTGCAGGAT GGGAATTTCT TGCCATGTGC 000400 000401 CTTTCTGCGT GGGCGGGGGG AAATGCTGCA ACAGGACTGG CTAAGTGTTG AAATTGTTTA AATGGGATAA TACGTAAATT 000480 000481 GGGGGTAAGA GGGTGGGGTC ATTCCTTTTG CCTGTCTGGT CAACTTACGC CCCCTACCCA CCTAAACGTA CTGGGTACCT 000560 000561 TTCCACATCT AAGTATCTGC GTCAAACTTC TTGAGCATTT ATGGGGCTTT AAAACAAACT TCTTGAGCAC TTACTGTGTC 000640 000641 AGTGCTAAGC ACCTTATTTA TATGTGTCAT CTCTTTTACT CCTCACAAAA TGCTGAGTCT TTTTTTTTTT TAATATAGAC 000720 000721 AAGGTCTCAC TATGCTGCCC ATCCTGAGCT CAAGCGATCC TCCTGTCTCA GCCTCCCAAA GTGCTAGGAT TACAGGCCTG 000800 000801 AGCTACTGTA CCCGGTTGCT GAGTCACTTT TTAAGAAACT TTTCATTTTG AAGTTTTAGA CTTACAGAAA AGTTGGAAAA 000880 000881 ATAGTACAGA GTTCTGTGTA CCATTCCCCT AATGTTAACA TCTTACACAA AT |
Predicted Small Protein
Name | NONHSAT071016_smProtein_731:850 |
Length | 40 |
Molecular weight | 4300.9124 |
Aromaticity | 0.102564102564 |
Instability index | 63.3512820513 |
Isoelectric point | 9.49310302734 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0143967496909 |
Amino acid sequence | MLPILSSSDPPVSASQSARITGLSYCTRLLSHFLRNFSF |
Secondary structure | LLLEELLLLLLLLLLLLLLEELLHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |