NONHSAT071117
Revision as of 23:20, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071117 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1722 nt |
Genomic location |
chr2+:64687999..64697120 |
Exon number |
4 |
Exons |
64687999..64688058,64693404..64693723,64693816..64693928,64695892..64697120 |
Genome context |
|
Sequence |
000001 TTCTGCAATA ACCAAAACCA AGGAGTATAA ATAACAATCA GGCTCTGGGG GAATAGAAAG CTGGAGCAAA GAAAGGCCTG 000080
000081 CTTTGTGGAC TATCTACAAG GAATCACAGC ATACATGCAT TGAATGTACT CAAACTTCAG CTCCATGCAT TTATCACCAA 000160 000161 AATATAGAAC AAAGCAAAAA ACTGTTTAAA CACTATACAT GGGTGCCATG GCTCATGCTT TAATCCCAGA GCTTTGAGGG 000240 000241 GCCAAGGCAG GAGGATCACT TGAGGCCAGG AATTGGAGAC CAGCCTGGCC AACATAGCAG GACCCTGTCT TTAAAAATAA 000320 000321 AAATAAAAAT AAATAAATTA TCTAGATGTG GTGGCACGTG CCTGTAATCC CAGCTACCTG AGACTCTGTC TCAAATAAAT 000400 000401 CAATAAATAA ATACCACAGG GACAATTCCA CCTGTCATCC CATTGAAAGA AAAAGGAGCC GAAGAATGGG GATGTGATTC 000480 000481 AAATGTGCCT TCATCCCTTC CATCACCTAC AAAAAAAAAA AAATAAATGT TTGTTGAATG AATGAATGGT AGCCAAGATG 000560 000561 TGGTATTCAT TATATATCAC TGTGCAAAAA ATTATTCCAA AATTTAGAGG CTTAAAATGA TAACAAACAG TTAAGATCTC 000640 000641 ACAGAGTTTC TGTCAGGAAA CTGGGAACAG CTTAGCTACA TAGTTCTAAC TCAGGGTCTC TCAGGTTATA TACAGTTAAG 000720 000721 CTATCAGCCA GAGCTGCAGT CACTTGAAGC CTTGATTGGG GCTAGCGGAT TCACTTTTCA ACGTGGCTCA TTCACATAGC 000800 000801 TGTTAGCCGC ACGAAATTCT CCACAGAACT GCCTGAGTGT AGTCACAACG TGGCAGCTGT GTTCCCTTTA GGGACTGATA 000880 000881 CAAGAGTGAA CAAGGTAGAA GCTGCAATGT CTTTGATGCC CTAGCCTCAG AGGCCACCCT TCCACAATAT CCCATTTCTT 000960 000961 ACATAGGTTA GCCCTATCCA ATGTGAGCAG GAACTACACA AGGTATGAAT ATACCAGGAA GGGAAACTGT TGGGAGACAT 001040 001041 CTTGGAGACC AGCTACACAG ATGGCTAATT CTTGCAAATT CTCAGAATTA TTTGAGTGGT TGTAGAATTC CTAGAAGGTA 001120 001121 AATGACAGTG GAGCCAGAGA AATGCTGTTC ATGGCTATTA TGTTTCCCTA GTATTACAAC CCCCACCCCC TACTACTGTT 001200 001201 GCCTGGGATT AGTGTTTTCT ATAGAATGTC TTCACTTGTA CATCCAGATC CTCAGAGTAA ACTATAACAA AGAGAGCATG 001280 001281 AAGAACCCAG AAATTCCTAG TGGATTGAAA ATAGCAAAAT TCCACTTATG AAATACGATG ACAAAGTCTT CCTAAAATTA 001360 001361 TGGTAGAGGG TAGAAAATCA GTTCTTATTG GGAACCTCAA ACAAACATAA ATGTTTTTGA GAAAAGTACT CAATTTTTTT 001440 001441 TTCAGTTCAA AGAGAAATGT AACTACTCAG AAAATGTGTG AGTTTTCCTT GTCTTCAAGT TTGATGTTTG GTTTTAATGG 001520 001521 AATTGGATAG GAAGATAGAC TGAGGTAGCA AAATCCATTA GTAGCCTGCA TCAAAGGGCT CAGATTCAAA TGCCTACAAG 001600 001601 GGGAAAACAT GTGATATTAA AGAAGCAAAA TGGGCCACAT GGGCAGCTGC CACCCAGACC TAGCCATTGT TGCCATAAAT 001680 001681 AAATGTGAGC CCTTTATTGC CAAAGCTTCT GGATTTTCTT TT |
Predicted Small Protein
Name | NONHSAT071117_smProtein_1121:1330 |
Length | 70 |
Molecular weight | 7969.4524 |
Aromaticity | 0.115942028986 |
Instability index | 58.8376811594 |
Isoelectric point | 7.58673095703 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0587548332647 |
Amino acid sequence | MTVEPEKCCSWLLCFPSITTPTPYYCCLGLVFSIECLHLYIQILRVNYNKESMKNPEIPS GLKIAKFHL |
Secondary structure | LLLLLLLLEEEEELLLLLLLLLLLLLLLLLEEEEHHHHHHHEEEEELLLLLLLLLLLLLL LLLEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii iiiiiiiii |