NONHSAT071219
Revision as of 23:21, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071219 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2736 nt |
Genomic location |
chr2-:66554655..66557390 |
Exon number |
1 |
Exons |
66554655..66557390 |
Genome context |
|
Sequence |
000001 ATTCTATCAT CAGAGCTGTT GGAGAAGAAT AAGTGGAGAT TTCATGATGC CCTTCTGGGG AATTTTTATC TTAAAGCATT 000080
000081 TGTTCCAAAC CAGGACAAGA GGGGGTTTGC TTTTTCACTG TGCCTATAGT CTTTCTTACC TGAATAAAAT TGTCGAAATC 000160 000161 TGTGCCTCAT TACATGCAAT ACATAGCATG GAACAGGAAA AAAAAATCCC ATTTGGTAAG ACAGAAATCA TGCTAACAAA 000240 000241 TTTATTTTTA ACTTTCCAAA GAAATACATA ATTCCCTTTG GAAGCAAAGC TTGATAATAG AAATGTAAAC ATTTTACAGA 000320 000321 ATGTTACTTT AAATTAAGAA TGTAAAAAAC AGTAGTCTAA ATACGGTATA AACTAGTATT AGAGCCTTCA CATTTCAACT 000400 000401 TAACTCCCCT TTAACCTTCA ATATATTTCC ATTTTTGGTC AGATTTAGTC AAGCAAGTAT TGATGTCTTC CCTTTTCCTT 000480 000481 TCTCAGATTT TTTTTTCCCA TTGTATAGCC AGCAGGTAAG AATTTGCCAG CACAAATGTT AATTCCTTTT TTTCACTCCC 000560 000561 ATCCGCTGAC AGCCTTTTTG CATTCTCTTC TCTTTCCTCT TTCCAAATTG TCCCCATCTG CCTCCCGCTG TATCTGCTTT 000640 000641 GAAGCTCCAC ACAAAAATGT TGTTGATTCC AAGGATGAGA TTTGTCTTTA TTTTAGGACT TTTAATACCC ACGAATGGAG 000720 000721 AAGAAGGTAC CAATGACGAG GCTTCCCCAG TTGGGAAGTT TAAAGAAAAG AGGGTAAACT GGGCAGAGTG GATAGGCTCT 000800 000801 GAGGATGTTG CTTTTTCCCC TCTGTCCTGG CTTTGCCTAG AGACAGCCCT GCCCAGGGAA CAGTCCCACC GCCCATTTCC 000880 000881 CCAAAGCTCC TTTTTCTCTT CTGCTTAGGT AGCGGTTGCC TGACTTCTCC CTGCAAAGGG AGTCTGCTAG TGTGGCCAGT 000960 000961 GCTGCTCCCA GATGTCCTTG CTTCCCTCTC CTCACTGGTT TCCATTTGAT CCCTGAACTG TCAGATTCCT CTCCCACATC 001040 001041 CCTTGGTTCT CAGATCCTGC ACTGACCACA GCCCTGCTTA GCCACCAGTT CAGAGTTGGG AAGTATAGCC CCGGCCTCTC 001120 001121 CATGTCATCC TTCCTTAGCC TTTTCCTGGT GCTGGGAAAA CACTCCATAC TTAGATGCCA CTCCCGCTAG CGAAACCACA 001200 001201 CTCGGAATAG TCAGAGAAGC TACCTGATTC CCACTTAAGT GTCGATGAAA TTTAGAGACT CATTAGGAGG CCTCTGGATC 001280 001281 ACCGGTGCTG GAGGCAGAGA CAGAGAGAAG TCAAGTGAAC AACCGGAAGC TGCTCCGCTG GTAATGGCGG GCTTCAGGTT 001360 001361 CCTCTGCCTC GGGTCTTGTC CACCCTCACT ATGATCTTCC CCTTTCCTTG CTTCTTTCCG ACTTGTTAAG GAGTCTTCTA 001440 001441 GTGGAGGTCA TTTGTTCACA GTCGTTATTT CTAAGTGGCT GGGGAAGAAG AGAAAAAGAA ACAAACCAAC TAAACACACA 001520 001521 TATTTCTGAA TCTCCTGAAT TTTTTAGCCA AGCTTATAAA AAAAACTAAC TGCAACATGA ATGAAAAATC AACTTTGCAG 001600 001601 AAAGTTGTGA GTACATCTAT CATATTTCAT TTTAACATTT AAATTCTTTT GTACACACTT TATGCTTTCT TTTTACAGCA 001680 001681 ATAAAATTAC AGCAAAACTG AGGACCTGCT GTGCTATGAA ACAACAGCAT AAAGTGCTTT TCTGGTGGCC ACTTAGCTAC 001760 001761 GTGAAGGGCC CAGGTTAACT AAAGTTAGGG AAAACGGAAA TGCTGACATT TCTTTAAACA ATAAAAATTA CAAGTGATTG 001840 001841 CCAGAGTGCC ATGAGTTGAC ATTTACAGAG ATTGTTCTTC GATTATATAT ATGAAATATC ATAAGTAATT AGCTTGTGGT 001920 001921 AATTACCTGC CCCTCATTAT TTTGCTTTTA GAATATTTTT AAAGCTTAGG TTACTAAAAT TTCAAATAAT CCTGGGCCGT 002000 002001 GCTGTCATGG GTCTTTATCC AAATGAATCG TGGTCTCTTG TAAACAGTCC TGTGATCTGA TTTCCATTGG GACAGAAGAT 002080 002081 GTAAAAGGCC AGGGATTTTC AATGGATTTA CACATATACT GTTTCAGTTA AGTTACCAAG GTCGACTTAA CAGACATTTT 002160 002161 CCTCAGAATC CTAAATACAC TTGCCACCCA GTCTCCTTCT GCCGCTCTGG AAGGAATGGG TGGTGAGATG AAAGAGGCTG 002240 002241 TGGGTGCAGG CGGGGAGGCA GCCCGGCCTC AGTGACATTT CCAACATGAT TTCCTTCTGT AGTTGGTACT GTCAGCTAAC 002320 002321 TAGCTTGGTG GCATTTGTTG CTGAAAAGCT GACTCAGAAA GATAGGTGAA CGTAGAGGCA GGGGCTGGAG TGCTCTTCTT 002400 002401 TTGGAAAGTT ATGTTCCGCT GAAGCCATTT TGTGAGGAAC AGATGCCTAC GAAGAAAGCT GGCAACTGGA ATTTGGTTGT 002480 002481 CCACGAAGGC ACTGAAGCAG CGCAGCCTTG ATCCTCAATC TTGGTTCCCC TCCCCTGCCC TTCAGCACAA AAGGAGAGGA 002560 002561 GCTGGCTTTC TCGAGACTCG CTCAGTCCAG GCTGGAACTA TTACAAACAA ATATTAATAA CACTCCATTA CTCTGGCTAC 002640 002641 ATTTTCAATA AAGTTTAAAT AGTCTGAGTT ATGATGATTA GCGAGAAATG TACGGATAAT AAAGGTAAAT GAGATTCATA 002720 002721 TTTAATCCCC AACTCC |
Predicted Small Protein
Name | NONHSAT071219_smProtein_656:907 |
Length | 84 |
Molecular weight | 9411.6668 |
Aromaticity | 0.120481927711 |
Instability index | 51.0530120482 |
Isoelectric point | 5.27081298828 |
Runs | 10 |
Runs residual | 0.0195448460509 |
Runs probability | 0.0417682388271 |
Amino acid sequence | MLLIPRMRFVFILGLLIPTNGEEGTNDEASPVGKFKEKRVNWAEWIGSEDVAFSPLSWLC LETALPREQSHRPFPQSSFFSSA |
Secondary structure | LLLLLLEEEEEEEEEEELLLLLLLLLLLLLLLLLLHHHEELLLEEELLLLLLLLLLHHHH HHHLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |