NONHSAT072895

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT072895

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2112 nt

Genomic location

chr2-:104729528..104738645

Exon number

3

Exons

104729528..104730041,104732212..104732379,104737216..104738645

Genome context

Sequence
000001 CAGCTCATCA CTGCTTCCCT GTTCCCAGTC TTGGTGGGTG GAAAACCCAG GACATACCCA CCCAGGGAGG GTCTCCTAAA 000080
000081 AAAAAAGAAG TAACATAACC GACCTGAAGC CATTTGCCTG GGAAATGTCT TTGGGCTGCT GCTGAGAACC AGTGAGGGTA 000160
000161 TTGCAGAAGA GGAAGAAAAT ACTAATGAAA CGGTGATGGT GCCCCAGGGT GTGTGGGGAG AAGGCAAAGC AGATTTGAAG 000240
000241 CACTGTGGGG ACTCCTCAGG CAGGCTGTCC CCATGAGCTG CTCCCCTACT CCCTGCACAT ATCTGCGGGC TAAAACCTGG 000320
000321 GCTCAGCCTT CATGTGGCCA ATGAAAATTG ACATTTTCCA TATCCCAAGG TTAGCCTAAC AGTAATTAAA GCATCACATT 000400
000401 GCACACAATT CTTTCCATTA TAATTTAAGT GGATTTTATG CTATTTTAAA AACCATTCTA GTTCCCACTG TGAATAATGA 000480
000481 ATACAAATAA AGTTGAATGT CAGACCTGGA ATACAAATCA AATAAGAAAA CCTGTAAGTA TCCCAAACAT CTGCCCCCAC 000560
000561 AATCCCTAAG TCTCAGGTGC TTTGCTGCCA GCCCAACATT TCATAAATGG TTGCCCTGGT TTGCTTTTGA TGTCAAGCTA 000640
000641 CCTCAACGGG CCACTTCTGT TCCATTAACA ATGATAAGGC ACCTCACACT CTGAGACATC CTTCCAGCTT CCACCGTCTT 000720
000721 TCCAGAAATT CATTCATCTT TCTAAGCAGC TATATTAGAC AGTGCCAAGA AGATTTCTAA AAAGGAGATA GACAGACACA 000800
000801 CCTACTCAGA AATCACAAGG TCTTTCAGAT ATGATAATTG GTTTTTTTTT TTTTTCCCAT CACTGAAAGA ATGGGGCTTT 000880
000881 TGCTCAATTC ATTTTCTACA CTTTCAGTCA ATGTGCTTAA AAATGTCCCT GCCTCTCTGG ATCCCTAGGA GGGACAATTT 000960
000961 TCAGCTATGC TCTCCTGCAA TTGTGGATGT GATTTTGTTG TGTTCTGATT CTGAATAACA CGACAGAAAG TTGACATCAG 001040
001041 CATAGCTTGC TCCTCTCATT GTCGTTCCAT GAAATAGGAA GAGAAACTGG AAACAGAGCT TTACACATGG TCTAGCTGGA 001120
001121 AGGATAGTAT AGAAAAGGTT GAAATCTTGT AACCCCATTT AAAAATGCAT GAGAGGGGAC AGATTTGGGT TTCTGCTGCC 001200
001201 TGTTCACCAT GGACACCCAA GAGGCAGAAA CAGGGAAAGA AGCCTGTAGC CTTTCTGTGA CTCATTGTAA TGCAGAAAAG 001280
001281 CCTGGTGACA GGGAGTTGTT TTTATTTTTA TACTATTACT AGACTGAAAA GCATTAATAT TGTCATACAG ATGGTCACCT 001360
001361 ATGTTGGAAG CTTATGAAAG AACTCTAAAT TGCGAAAAGA TTATTCTAAA TTCAGGAAAG CATCAACTCC TCCTGTCTAC 001440
001441 TGTTGATGGG CATTTAGGTT GATTCCATGT CTTTGCTATT GTAAATAGTG CTGCAATGAA AATACACATG CATGTGTCTT 001520
001521 TATTGTAAAA TGATTTATAT TCTTTTCACT GCTTTTTGTT TTTTAATAGA ATCTAGGTTT TGTGTCTTGC TTAAGAATAC 001600
001601 CGTCTTATCA CCCAGGTATG AAGCCCATCA CACATTAGCT ATTCTTCCTG ATCCTCTCCC TTCTCCCACC CCCTGTCCTC 001680
001681 CAACAGGCCC CAGAGAGTGT TGTTCCCCAC CAGTGTTCAT GTGTTTTCAT CATTTAACTC CCACTTATAA GTGAGAACAT 001760
001761 GCGGTATTTG AATTTCTTGA AACATACAAA TTTCCAAATC TGTCACAAGG AATAGGAAAA ATTCCTAACA CATCAGTCAA 001840
001841 TCTCAATCAG ATATGTTAGC TTTCTCTGGG ATCCACTGAC AATGTCTAGA GGCCTTTTTG TGTCGCAACT CAGGGGGAAA 001920
001921 GGGTGCTATT GGCATCTGGT GAGTAGAGGC CAAGGATGTT CCTAAACACC ATTCAATCCT GTAATAAATA GGACAGCTCT 002000
002001 ACACAAAAAA GAATTATTCA GCCCCAAGCA TCAATTGTAC CAAGATGGAG AAACCTGTTA ATACAACTTT TCTTGTTATA 002080
002081 TAATTCTAAT TACTCATCAA AAACCTTTGA CA
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Predicted Small Protein

Name NONHSAT072895_smProtein_1511:1753
Length 81
Molecular weight 9163.9486
Aromaticity 0.125
Instability index 58.5175
Isoelectric point 8.15228271484
Runs 8
Runs residual 0.0388157894737
Runs probability 0.0387630277337
Amino acid sequence MCLYCKMIYILFTAFCFLIESRFCVLLKNTVLSPRYEAHHTLAILPDPLPSPTPCPPTGP
RECCSPPVFMCFHHLTPTYK
Secondary structure LEEEHHHHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLEEEEELLLLLLLL
PRMN LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLL
PiMo iiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooooooooo
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