NONHSAT072895
Revision as of 23:29, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT072895 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2112 nt |
Genomic location |
chr2-:104729528..104738645 |
Exon number |
3 |
Exons |
104729528..104730041,104732212..104732379,104737216..104738645 |
Genome context |
|
Sequence |
000001 CAGCTCATCA CTGCTTCCCT GTTCCCAGTC TTGGTGGGTG GAAAACCCAG GACATACCCA CCCAGGGAGG GTCTCCTAAA 000080
000081 AAAAAAGAAG TAACATAACC GACCTGAAGC CATTTGCCTG GGAAATGTCT TTGGGCTGCT GCTGAGAACC AGTGAGGGTA 000160 000161 TTGCAGAAGA GGAAGAAAAT ACTAATGAAA CGGTGATGGT GCCCCAGGGT GTGTGGGGAG AAGGCAAAGC AGATTTGAAG 000240 000241 CACTGTGGGG ACTCCTCAGG CAGGCTGTCC CCATGAGCTG CTCCCCTACT CCCTGCACAT ATCTGCGGGC TAAAACCTGG 000320 000321 GCTCAGCCTT CATGTGGCCA ATGAAAATTG ACATTTTCCA TATCCCAAGG TTAGCCTAAC AGTAATTAAA GCATCACATT 000400 000401 GCACACAATT CTTTCCATTA TAATTTAAGT GGATTTTATG CTATTTTAAA AACCATTCTA GTTCCCACTG TGAATAATGA 000480 000481 ATACAAATAA AGTTGAATGT CAGACCTGGA ATACAAATCA AATAAGAAAA CCTGTAAGTA TCCCAAACAT CTGCCCCCAC 000560 000561 AATCCCTAAG TCTCAGGTGC TTTGCTGCCA GCCCAACATT TCATAAATGG TTGCCCTGGT TTGCTTTTGA TGTCAAGCTA 000640 000641 CCTCAACGGG CCACTTCTGT TCCATTAACA ATGATAAGGC ACCTCACACT CTGAGACATC CTTCCAGCTT CCACCGTCTT 000720 000721 TCCAGAAATT CATTCATCTT TCTAAGCAGC TATATTAGAC AGTGCCAAGA AGATTTCTAA AAAGGAGATA GACAGACACA 000800 000801 CCTACTCAGA AATCACAAGG TCTTTCAGAT ATGATAATTG GTTTTTTTTT TTTTTCCCAT CACTGAAAGA ATGGGGCTTT 000880 000881 TGCTCAATTC ATTTTCTACA CTTTCAGTCA ATGTGCTTAA AAATGTCCCT GCCTCTCTGG ATCCCTAGGA GGGACAATTT 000960 000961 TCAGCTATGC TCTCCTGCAA TTGTGGATGT GATTTTGTTG TGTTCTGATT CTGAATAACA CGACAGAAAG TTGACATCAG 001040 001041 CATAGCTTGC TCCTCTCATT GTCGTTCCAT GAAATAGGAA GAGAAACTGG AAACAGAGCT TTACACATGG TCTAGCTGGA 001120 001121 AGGATAGTAT AGAAAAGGTT GAAATCTTGT AACCCCATTT AAAAATGCAT GAGAGGGGAC AGATTTGGGT TTCTGCTGCC 001200 001201 TGTTCACCAT GGACACCCAA GAGGCAGAAA CAGGGAAAGA AGCCTGTAGC CTTTCTGTGA CTCATTGTAA TGCAGAAAAG 001280 001281 CCTGGTGACA GGGAGTTGTT TTTATTTTTA TACTATTACT AGACTGAAAA GCATTAATAT TGTCATACAG ATGGTCACCT 001360 001361 ATGTTGGAAG CTTATGAAAG AACTCTAAAT TGCGAAAAGA TTATTCTAAA TTCAGGAAAG CATCAACTCC TCCTGTCTAC 001440 001441 TGTTGATGGG CATTTAGGTT GATTCCATGT CTTTGCTATT GTAAATAGTG CTGCAATGAA AATACACATG CATGTGTCTT 001520 001521 TATTGTAAAA TGATTTATAT TCTTTTCACT GCTTTTTGTT TTTTAATAGA ATCTAGGTTT TGTGTCTTGC TTAAGAATAC 001600 001601 CGTCTTATCA CCCAGGTATG AAGCCCATCA CACATTAGCT ATTCTTCCTG ATCCTCTCCC TTCTCCCACC CCCTGTCCTC 001680 001681 CAACAGGCCC CAGAGAGTGT TGTTCCCCAC CAGTGTTCAT GTGTTTTCAT CATTTAACTC CCACTTATAA GTGAGAACAT 001760 001761 GCGGTATTTG AATTTCTTGA AACATACAAA TTTCCAAATC TGTCACAAGG AATAGGAAAA ATTCCTAACA CATCAGTCAA 001840 001841 TCTCAATCAG ATATGTTAGC TTTCTCTGGG ATCCACTGAC AATGTCTAGA GGCCTTTTTG TGTCGCAACT CAGGGGGAAA 001920 001921 GGGTGCTATT GGCATCTGGT GAGTAGAGGC CAAGGATGTT CCTAAACACC ATTCAATCCT GTAATAAATA GGACAGCTCT 002000 002001 ACACAAAAAA GAATTATTCA GCCCCAAGCA TCAATTGTAC CAAGATGGAG AAACCTGTTA ATACAACTTT TCTTGTTATA 002080 002081 TAATTCTAAT TACTCATCAA AAACCTTTGA CA |
Predicted Small Protein
Name | NONHSAT072895_smProtein_1511:1753 |
Length | 81 |
Molecular weight | 9163.9486 |
Aromaticity | 0.125 |
Instability index | 58.5175 |
Isoelectric point | 8.15228271484 |
Runs | 8 |
Runs residual | 0.0388157894737 |
Runs probability | 0.0387630277337 |
Amino acid sequence | MCLYCKMIYILFTAFCFLIESRFCVLLKNTVLSPRYEAHHTLAILPDPLPSPTPCPPTGP RECCSPPVFMCFHHLTPTYK |
Secondary structure | LEEEHHHHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLEEEEELLLLLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooooooooo oooooooooooooooooooo |