NONHSAT072900

From LncRNAWiki
Revision as of 23:29, 16 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT072900

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

675 nt

Genomic location

chr2-:104790463..104834343

Exon number

4

Exons

104790463..104790733,104795323..104795508,104795599..104795674,104834202..104834343

Genome context

Sequence
000001 AACCTAACCT CTGAAGTCAT GCCATGTCAC TTCTGCTGAG TTCCATTAAT TAAAAATGAG TCACTGAGGG CCAGGCACAG 000080
000081 TGGCTCATGC CTGTAATCTC AGTATTTTGG GAGGCCGAGG TGGGCAGATC ACTTAAAGTC AGAAAAGTAA GTATATTATC 000160
000161 AAATGCAGAA TAAGGTAAAA CTTTGAGTGT CATGTAAATA ACATATCTCT AATAGAAAAG ATAAAACGCA GGTAAAAGTA 000240
000241 GTAACAGTAT AGTTTTGTAC GTGATTGAAT TTATCAGCTT AAATAACCTG TCATAACTAT AATAAGTTTT ATGTAGACTT 000320
000321 TAAGGTAAGC AGAAAGCAAA AATGTATAGG AGATCTAAAA AAAATACAAA GAGGAAGGAA TCAAAGCATA CAACTACAGA 000400
000401 AAATAGATAT GAGATGTTGA AGTCCTTAAA CAGGTTGGTG GATTTGTCTA TTTGTCTATT TGTCCTTTCA ACTCTTAGTT 000480
000481 TTTGTTTAGT GTATTTTGAG GCTCTGTTGT GTGCTTGTAT GTATGCACAC ATTTTTAATA ATTTATTTCT ATTTTTTTAC 000560
000561 TGTTACATAA TCTCTCTTTT TTTCTATAGG GATATTCTTT GTTTTGAATT TACTTTATTC TGACATTAAT ATGTCACTTT 000640
000641 TTCATTTTTA ATTATTGTTT ATATAATCAG TTCTT
[back to top]

Predicted Small Protein

Name NONHSAT072900_smProtein_341:622
Length 94
Molecular weight 11355.3863
Aromaticity 0.204301075269
Instability index 51.0066666667
Isoelectric point 8.97015380859
Runs 6
Runs residual 0.0664078056551
Runs probability 0.0172967084732
Amino acid sequence MYRRSKKNTKRKESKHTTTENRYEMLKSLNRLVDLSICLFVLSTLSFCLVYFEALLCACM
YAHIFNNLFLFFYCYIISLFFYRDILCFEFTLF
Secondary structure LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHH
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHH
HHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTT
TTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii