NONHSAT075452
Revision as of 23:39, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075452 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2361 nt |
Genomic location |
chr2-:172175163..172177521 |
Exon number |
1 |
Exons |
172175163..172177521 |
Genome context |
|
Sequence |
000001 GGTAATGATG AGGGATAGGT AGAAAAGATG GGAAGGGGGT CAGCTTGTAG ATAACCTAGA CTAGCAGGTG TATGACTTCT 000080
000081 AGTCTCTGAA CTGGAGCCAT CTGAGATCAG TTTGAGATAT GGTGTCTTAT AAATGTATTG AGAGAGGTTG AGGAGTTGTC 000160 000161 TATAGAATGG AATGGAGTGA GGTCAGAGAT CAGTGGCAAG GAAGACCACA TAAAGGTTTT TGCACAAACT TGCCTTGATG 000240 000241 GCAAGTCCTC AAAAGTACAA TTATCAAGCT TTCTGTTTAA ACATGCATAA GTCAGTAAAT ATAAACATTA AAATTTGCCC 000320 000321 AAGACTCTTA ACTCAGTTGT ATTTCATAAT TAAAGTGTAC ATTAAAAAGC CAAACTAGTC ATGAAAGTAT TACATACAGC 000400 000401 AAGGGCAGTT TAGATAAGTT AATGTTGCTA TGGGAACCCC AGCAGATCTC CTTGTGTCTC CGTTTAAAAA TCATGGCCCA 000480 000481 AGGTGGTTTC AAAAACAACA GAAGGTAAAA TTATTCTCAC ATTCTCACAC ATGTAAATTG TACTGTCTCT CTCAGTTCTA 000560 000561 AATAGCGGAT TCAAGCCAGC CTCTTGACTG GCACAGTAAA ATTCGGCTTC GTGTCTTTCT ATAATGTATT ACAGCATGTG 000640 000641 AGTTAACCTT TAGAAGCTTC AAAAATACAT CAACCAAATT TGGACTGTGA GACACAAACT GGTCTCTTTT GGGCTCTGTC 000720 000721 CAGCATAGCC TTCCTATTCC ACATGGCTGC GCAGCAGGGC CATTTCCACC AGTGTCTTCT GCTTGCCTGG TCAGTCTTTC 000800 000801 TGTCTCTTAA CCTACCTACA ACAACTTCCT TCTCGGGGTT TGCTGCTAGA TAGAAATGTA GATTTTGGCA CAGAAAGAAA 000880 000881 AGGGAAAGAC CTATTTGGAA TTTTGTCCAT AGATGTTAAG AAATCATGAA GCGTTGCAAA TGTAACTGCT TGGGTATTAG 000960 000961 TTTAAAATAT TTGATAACTG CATGAAATTC TAATTTACCC CTCACATCCA TAAAGCTAGG ACCAGTTGGT TAGGCAGAGT 001040 001041 TTGATATTTA AAAATTCATC TTCTGAGAGA GCTGAATTTC AAAAGGACCA TTTTCTTTCC AGGAGTAAAA GGTATATTCT 001120 001121 TTCATCTTCT TACAGTACAG AAACAATGGA ATATATTGTT TAAATGCACC CTTCATTTTT TTCTCCATTT CTAAAAATTC 001200 001201 ACTTTTGAGC ATCGTCCAAA TGTAAAAATT CTCACACATG AGGAACTGTT TCCGAAGGTT GTGAGAAAGT CAAGATAACA 001280 001281 GTTTCTATTA TTAAAAGTTT TGCATTCGGT ATGACACATT TGCCTGTATT GAAACACCCA TTTAACATTG ACTTCTGAGA 001360 001361 ACTTATTTGC TTTGCCTCTC TCGATTCCAT ATGCTTTGTC TACAAATTGT GAACACGTCC CGGTTTCTAC CCGTGTGTGA 001440 001441 TTCTAAGTCG TTGCTGTACT CTAGCTTGTA CGTGAAAATT CACCCATATG CAGATAGCTG CCCTCTTGGA GGCAAAACTT 001520 001521 AAAGCTATCA GAACCATCTG GATTGTTAAA CCCCAAAACT TCCAACTCAT CAAAGTCCTG AAGCCTGAAT AGATCACACA 001600 001601 TTGTTACTTC TAATTGGTTT TGATGTTTGT TATGCTCCTC ACAAGTGCAG ATAACTTCAC ATTTGCATCA CTAATCGACC 001680 001681 TCTTTCAAAG CCTCTGCTCC TCCTGCTTCC TGCCTCTGTT AGTCATCAGG AGACTTAGTG TTGGCGTGGG TATTTTCCCC 001760 001761 GCTTGTGAAA GTGCATTGTC AATTCTAGAG CATTAAATAT ATGTGAGGTA TTGTTATTAA TCTACAAGGC AGTACACACA 001840 001841 GTATTCCAGC AACAGTGACT TTTTCAAAGG TTTTATGAGA CATTGTAAGA AAGACAGTAT CTTTCCATGG AAAAAAGTGT 001920 001921 TGCCTCAGAG TCAAACAGGA AGCATGGGTC CTAGTTCCTA TTGAACTGCT TAGCTACTCT TAATTTAGCT CTGAATGCTA 002000 002001 GATTTTGTGT ATACTATACA CATTATTTAA TCCTCAAACT CCTAGGAATT CATTTTGATG ATAACCATTT ACAGAAGAGA 002080 002081 TGTTGGGTAA CTTGCTCAGG ATACCACATC TAGTAAGTAG CAGAGTCACA ACTCGGACCC AGAACTCTCT GATTCCAAAA 002160 002161 CCTCTACTTG CTGCTCTAGT AATGGATGGG CCCAAATGCT GCTGGGAAAG GCACCAGGGA AGAAAGAGCT TTCTGAGTCA 002240 002241 AGCAGAAAAC GATAGCAGTG GAGAGGAGTT TGTTTCAGAC GACCTTCAAG GTTATGGCTC ATTCTAGATC CAATCATTCT 002320 002321 AGCAAATAAG TAGGTTACAC TTGTCCACAA TTACAAATTG G |
Predicted Small Protein
Name | NONHSAT075452_smProtein_1622:1795 |
Length | 58 |
Molecular weight | 6238.3829 |
Aromaticity | 0.105263157895 |
Instability index | 53.5315789474 |
Isoelectric point | 4.74920654297 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0623957290625 |
Amino acid sequence | MFVMLLTSADNFTFASLIDLFQSLCSSCFLPLLVIRRLSVGVGIFPACESALSILEH |
Secondary structure | LEEEEELLLLLHHHHHHHHHHHHHHHHLLLLHHHHHHHLLLLLLLLHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |