NONHSAT075799

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT075799

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

4505 nt

Genomic location

chr2+:179419288..179423693

Exon number

1

Exons

179419288..179423693

Genome context

Sequence
000001 TGGTTGTAAT GATGCACTCT TCCAAATGTT CAGACACCAT AGACCACACA ACGCGGCTTG TCTCACGCTT TTCCACAATG 000080
000081 TAGTGAGTGA TTTTTGCACC ACCATCATCA GCTGGAGGCC GCCAGAGAAG GGTGATCTTC TCAGCAGTTA CAGTCTTAAA 000160
000161 TTCAATTGGT CCACCAGGTG GGCCTGGTTT GTCTATCAGT GAAAGGACAA AACACGATGT TAGTACTTCT TTAAAGCCTA 000240
000241 CTTGTTCAAA ATTACTAAGC TTTAGGCAAA TGTAATATGA CAGTGGTCTG TATTCAGCAC CTACCAAGGA TCTGTACTCT 000320
000321 GATGGTGGCT GAGGCTGAGC CCATGGCATT CCTTAGTTTT AATTCATAGC ATCCACTATT AAGGCGATCG GCATCTTTGA 000400
000401 TGAGTATAGA TGCGAGGTCC GTGGTATTTT CAACACACAC CAGTGCATTG GTTTGTAATT CTTTATCATC TTTATACCAC 000480
000481 TCAATAGTAG GCGCAGGTTT GCCAGAAATG CCAGCTCTGA GCTTCACAGA TGTACCTGCT CTGTATTTGA CAACTTCTGT 000560
000561 ATATTCTAGA GGCAAATCAA TTACAGGACC ACCTGCAAGA AAAACAGATG AGAAATATTT AAAATATTAT AAGGATGGAA 000640
000641 AAAAAAATAG TTGCACCAAC CTTAAAGTAA GGTCATTGGC CATTATTAAA TTATACACAC ACACCATCAT TATAATTCTA 000720
000721 TGCAATTATT ATTTAAAAAT TAAAAATTTA TAGGCCACTC TTCTATCTCA GATGGGGTAG AAAGACTGTG AGTTGTGCAG 000800
000801 GGACTTAAGC ACCTTTTACA TGTGTTTTAA AGTCCATTAG TTGCTTTATT CCAGTGAAGA AATGGGATAT GGTAGTGAGA 000880
000881 ACATCATGGA AGAAGCTGTT AAAACATTTC CTTTCACTTT AGCTTTTCTT TCCTTTTCTT CTACGCACCT CCTATTCTTT 000960
000961 TTCTTTTCCC ATCCCAGTTC ACTGATATCC AAGTGTGGAT GGTTCATGTC AGACACTTAA AGTCTGAATT CTCTACCCAC 001040
001041 AGAGCTACAT AATTACTGGA CAGATTTTCT GCCATGCTGT TTGGAATTAT CAAGAAAGAT AACTAAATTC GACTTGCTTT 001120
001121 ATACTCTCAT AAACACTGAT TCAGTATCCA CAAAGCCTGA TTCATAAATA ATGAACAGCC CTGAGATTCT CAGCATGAAG 001200
001201 ATGGAAGTGG ATACTTTTGC CCAGACACTA CAGTGGCTCA ATTTTCTCTT AGCAAATGGA GATCTTTTAG GTAAAGTGTC 001280
001281 ACAGGATACC TGACTCTCAT GACGTTTTAA TTTTCAAAAC ATTGTTGAGT TGAATGTGCC ACTTATTTTC CAGAATGGTG 001360
001361 AAGAATACGC ATTTTGGACT AACCATGATA GAGAGGGCTC TGAAGTCTGT CTGTCTGAAT TCCCACTCCA TCCCTAACGG 001440
001441 GGAAGTTACA AAAGCACTCT CAGCCTCAGT TTCCCTTCTA TAAGATGGCT AATATGAGGG CTGTGAGAAC TAAGGGAAAG 001520
001521 AATTCATGAA AATTCCTCAA TAAATGTTAG CTGCTGCTAA TACTATCATC ATCAAAGTCT GTGTTTAGAC CAGGCATGGT 001600
001601 GGCTCACACC TGTAATCCCA ACACTTTGGG AGGCCGAGGT GGGTGGATCA CCTGAGGTCA GGAGGTTGAG ACCTGCCTGG 001680
001681 CCAACATGGT GAAACTCCGT CCCTACTAAA AATACAAAAA ATTAGCTGGG TGTGGTGGGG CATGCCTGTA ATCCCAGCTA 001760
001761 CTCAGGTGAC TGAGGCACGA GAATCGTTTG AGCCCAGGAG GCGGAAGTTG CAGTGAACCA AGACCGTGCC ACTGCACTAC 001840
001841 AGCCTGGGCG ACAGAGTGAG ACTCTGTCTC AAAACAAACA AACAAACAAA CAAACAAACA AAAAAAAACC AAAAAATGAA 001920
001921 GTCTCTGTTT AGTCTGTGGC TTATTTAAGA GCAATATTCT CTAGGAACTC AACCATGGTT TAATTATTGA CTCTGATAAT 002000
002001 TTAAAATAGA ATGAAAGCAC CAACTCATAC AATCAATCAT AAAAGGTTGA AGTTGGAAAG GCCCATAGAT ATCCTGAGGT 002080
002081 CTAAATCTCT CACTTTACAG TCAAGTCAAG AGGGCTGGAA AGGTATTTAA GGAATTTTCC TCAGACTCCC AGCTAGTCCA 002160
002161 TAATTTCTTC CAAAAACCCC ATGAAGGCAC AGAGTAAAAG TTATTCTATA GGATTAGAAC CAGGAAAAGG TATGCGGAAA 002240
002241 TACTGAGTTA AATAGCAATT TTGATTCAAA GTGCTAAGCA TGCTTACCAT AAGAATCGAT GCAAGTAATG GGCCCTACAA 002320
002321 CCTCAGATGG ATTGCTAATG GAACCAACAG CATTCCTAGC AAAGGCACGG AATTCATACT GGGAATTCTG AGTCAAGCCA 002400
002401 GAGATGGTGA ATTGAGTTTC AGTAACATTG GTGAAGCTGG CCTTGGTCCA TCTGCCATCT GGAAGGTCAC GTCTCTCAAC 002480
002481 AATGTAGCCT GTAATCTTGC TACCTCCATC GAAAGCTGGT TGTTGCCATG AAAGGCTGAC AGAGTTCTTT GAAATATCAG 002560
002561 TGATACGAAC ATTTCTTGGG GGTTCTGTGG TAATAAGAGA AGCAGATTAG CGGCACTTAT AATATTTTGC TTCGCAGAAG 002640
002641 TAAGATTTGC ATTTTTGTTA TCAGAACTGC CCTTCCCATG ACAAATACGT ACCACAAGCA TCAATTGCCA AGACTGGTTC 002720
002721 AGAAGGATGG CTAGGTTTTC CAACTCCAGC AGCATTTTCT GCATACACCC TGAATTCATA AATAAGTCCA GCACTGATTG 002800
002801 TTGTGACTTT GAAGTGAGTT GTGCGGATGA CCAGTTTGTT GGCTTTTTGC CATAAAATAC TGTTTCTGTC TTTCATTTCC 002880
002881 AGGTGATAGC CTACGACTGC ACTGCCTCCA TTTGACACTG GTTCATGCCA GCCCACAGTG ATGCTTTCTC GAGTAACATT 002960
002961 AGTGACCCAT GGTGTAGATG GTGGTCCAGG TGTTGCTACA AAAGAGAGAA ATCCTATAGA TTAGTACAGA CAATAACACA 003040
003041 TTTATGGTAA AAGAAAACCT GGATCTTTGA AAAGTTGGAC AACTTACTGT ATGGTAGTTT GACAGTCACA CAAGCTGAAT 003120
003121 CTATATGATC ACTGATGCCA AAGCGGTTTT CTGCCTTGAT GCGGAATTGG TATTCTTCTC CTGTGGTCAG TTTCATGACT 003200
003201 TTCATCATGG TTCTTGCAAC TGTTGCAGAC ACTTCAGTCC ACACTGCAGT ACTTGTTTCT CTTTTGAGTA GAATGTAGTT 003280
003281 GGTAACTTGA CTTCCACCGT CATACTTAGG TGGCTCCCAT TTGAGAGTCA CACTTTCTTC AGTTATATCA CTAATAACAA 003360
003361 CAGGGCCAGT TGGAGGACCA GGCCTGTCTA GCACAACAAT GTTAATGAAA GCTTTGGTTG TACCACTGGA GTTGGCAGCA 003440
003441 GTGATTTCAT ATCTCCCAGC GTCAGCTGTA ACACTTTCTT TGAGATTGAT GGTCAGGTTC TCAGCAGTAA TTTCGGTATT 003520
003521 AAATCTCATG GTTGCCTTAA GGGGGACACC ATCTCTTGAT AAGGTCACTT TGGGAAGTGG TTTTCCAGAG ATTGGAATGT 003600
003601 CAACTTTAAG GTTTGAACCA GCTCTAACAT ATACAGTGTG ACTTGGGAAA TTCTTCATAT CAATTTCAGG TGGTTCTGAA 003680
003681 AAATGAGTAT AGAAAGTGAA AGTGAAAAAG TGTTTCTGAA AATTAACATA AATCAATGCA AATAATTTCA AATTTTGCTT 003760
003761 CTACACAAAA TTAGACATAC CTAGTTGCTC CTTAATAAGA ACAGGAAGCA GAAGCTCTCT CGGGTCACTC AGGCCAGCTT 003840
003841 GATTTTCAGC AAACACTCGG AAAAAGTATT CAGAATTCTC TCTCAGACCG GAAACAACGT GATGGGTTGA CTTTGCCACT 003920
003921 GCACATTTAA CCCAGTTTTT CTGTCCTTTT TCTAGTGCTT CAACGACATA GTGTACAATT CTGCTTCCGC CATCATGTTC 004000
004001 AGGCTTCAGC CAGGTCAGGG AAACACTGTC TTTGGATATA CTTGTTACTC CAAGTTTTTC AGGTGGGCTT GGTTTTTCTA 004080
004081 AGAAAACAAA GCATCAAAAG AAAGTGAATA ATTATTACAG CACTTTTAAA TGCGCACTCT TCATGTATTG TCAAAAGAAA 004160
004161 ACTTTTAAAT GAAGGCCATA TTTTTATGTT GATTTTAGTC TTCCTTTTTA CATAACCCAT TTTGCTTCTG AACCAACCAA 004240
004241 GGCTCCCACA AGCTATGTCA TTACATGCTA TAGCATTCAA ATCCAAATTA AGGGTAAAAT GACCAGATTA AATGATAAAA 004320
004321 TTTACTCCAA ATTCACCATG GGGATAAAAA AGAGGAACAA GATGAACAAT CTTTTAAAAA ACTTTATATA CAATTTCTGT 004400
004401 ACACACACCC CCACCTCCTG CAATTAAACA GTAGCATCGC CAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 004480
004481 AAAAAGGAAA AAAAAAAAAA AAAAA
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Predicted Small Protein

Name NONHSAT075799_smProtein_2279:2530
Length 84
Molecular weight 8847.9526
Aromaticity 0.0722891566265
Instability index 41.3
Isoelectric point 5.05218505859
Runs 13
Runs residual 0.0165997322624
Runs probability 0.0425516013752
Amino acid sequence MLTIRIDASNGPYNLRWIANGTNSIPSKGTEFILGILSQARDGELSFSNIGEAGLGPSAI
WKVTSLNNVACNLATSIESWLLP
Secondary structure LEEEEEELLLLLLLLEELLLLLLLLLLLLHHHHHHHHHHLLLLLEEEELLLLLLLLLLEE
EEEELLLHHHHHHHHHHHHHLLL
PRMN -
PiMo -