NONHSAT075919
Revision as of 23:41, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT075919 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1960 nt |
Genomic location |
chr2+:183650679..183652638 |
Exon number |
1 |
Exons |
183650679..183652638 |
Genome context |
|
Sequence |
000001 CCAGGATCTG AGAGAAACCA AAAAAAAGTG GGGAGATAAT AATCCAGGGA CTTTGGGTAG TTGTTAAATG GATGGCTGTA 000080
000081 TCATAAGTAT TGAAGCTGAT AAGGGATAGA TATGGGTTGA TTATATATTT GTTTTGCTGG AAAATGTTCC ATGATACAGT 000160 000161 TTTAATAACA GTTTTAATTT CAGAAACGCA AAATATTGTT TTTACAACTA AGATAACATT GAAATTTATA CAGAACCCCA 000240 000241 AATGACAAGT GTATAATCAA CTGCCAGGAA ATCAGTTTAC CTGTTAGAGG TAGAAAAGTT ACAGGATAAA AATGGAATTG 000320 000321 GTTGGCACTA AGTAGGACCA CTTTCGAAGA GAATGGGTAG AATTCATTTT CTTTTCATTA CTTCCTTTCA GCGTGGAGCC 000400 000401 TGAGCATCAT TTCACCATTT TGAGCCTCAA GCTCTCAATA TACTGGAAAA TTGTAATCCT GTTCCCTTCA CTGAGGTCAT 000480 000481 AATACTGAAT TCTGAAATGG AAATAATTGA CTAGAGATTG TCTAGTCAAA CTAGACTGAT GAGGTCTCAC CATTTTCTTC 000560 000561 AAGGAAGATC AACTGAACCT GCCTGAAGGC ACAGGGTACA CCATCTTCCT AAGGTGTGAC CTCCTGTTCC CAAAGGAATA 000640 000641 GACCTAGGTG ACCAACCAGC AGCACCTAGC TTTTGCCAGC TACGCAGCTT TGAATAGCCT TCCACCCTTG TGTCCTTCAA 000720 000721 ACCCCATTCT TGCCAAAGCC AAGTTCTCTC CCTCCCTCTC AACAGATTTC TCAGCACACA TCAGATTTCA CACCGATCTA 000800 000801 TGAAAAACTA TTTTTAGAGA TTATtactat ggtccgaatg tttatatccc ctcctgctct ccctaaaatt atgttgaaat 000880 000881 cctaaccccc aaggtaatgg tattaggaat gtgaggcctt tgggaagggt ttaagtcatg agggcagaga cctccttttt 000960 000961 gagattggta cacttataaa agagacccca gtatcttgct cgtcccttct gccatgggag aacacggtga gagcgagcca 001040 001041 tctgtaaacc aacaaacaag gccctcacca ggcactcaat ctgccagcac tttgatagtg gacttcccag cctccagaac 001120 001121 tatgagaaat aaatgtgttt ttttaagcca gccagttcat tttgttatag cagcctggac agacAATATA TTGAAAAAAA 001200 001201 TCAGTTTTGC AGTTCCACTG GTCAGGTGAA TGCCAGAGGA GCTGGTCCAC AGTCATAGGC GTTAAACTTC TTTTGGAAAC 001280 001281 TATACTGGCT TGACAGTCTC CCCATACTGA TTCAGACTCC AGCAAGGTGC ACATCACCCG CTAGTCATTG TGGCTTCTGC 001360 001361 TGCTTTAAGG TTCTGGAATT ATGGAAGAAA ATAGGGTGGG CCTACTGTCT CTTCCCACTG TTTACCTGGT GTTTTGATTC 001440 001441 TGAATAGTTT ATAAGCTCTG CTATTCAAGA AGTTTATACA AACCCGTAAT GTACTACCAA ACCGTTCATT CATTATGACA 001520 001521 AAACTGCCTA CCAAAGCCAC AGACTTTAAG TCTTTGCAGG ATTACCACTG AAAGTTCACA TGCTTGGTTA GCAGTCTTAA 001600 001601 CCTCTAACCA ACTGAACAAA TCGAAGACAT TTAATTTAGT CAAAATAGGC ATGGGAATGA AAGTGAGACT TAGAGGCAAA 001680 001681 GAATGAggcc aggtgcggtg gctcacacct gtaactccag cactttggaa ggcccaggca gaaggattcc tgcagaccag 001760 001761 gatttcaaga ccagcctgga caacctggtg aaacctcctc tctacaagaa aattcaaaaa ttagccaggc gtggtagggt 001840 001841 atgcctgtag tcccagctac ttgggaggct gaggtgggag gactgcttga gcccaggagg tccaggctgc agtgagccgt 001920 001921 gatcacacca ctgcactcca gactgggagg cagaggaaga |
Predicted Small Protein
Name | NONHSAT075919_smProtein_1013:1228 |
Length | 72 |
Molecular weight | 7824.8853 |
Aromaticity | 0.0704225352113 |
Instability index | 53.7549295775 |
Isoelectric point | 9.18389892578 |
Runs | 10 |
Runs residual | 0.00770941438102 |
Runs probability | 0.0693870340929 |
Amino acid sequence | MGEHGESEPSVNQQTRPSPGTQSASTLIVDFPASRTMRNKCVFLSQPVHFVIAAWTDNIL KKISFAVPLVR |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLEEEEELLLEEEEEEEHHHHHH HHLLEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT TTTiiiiiiii |