NONHSAT076286
Revision as of 23:43, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076286 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1625 nt |
Genomic location |
chr2+:200757788..200759412 |
Exon number |
1 |
Exons |
200757788..200759412 |
Genome context |
|
Sequence |
000001 TTGATACCCT TTTCTGAGGA GGTTGGAATC AACCCAACTG AGAGAATGAA CTGTGGAGAT TGCCAGTTGT GTAGAATGAA 000080
000081 CAGTTTGTCA AGGTGAATCA AATATCTCAT AGCTAGTTTG AAAGGAAGGC AGATGTAATC TTGAATGATT CACACAAATT 000160 000161 CATAAGGTGT TAAAGGCATG aaaataaatt ttaaaatact taaaaaaaaG gtgaaggaaa aaaccgcttc gacgtgggag 000240 000241 ggctgcaaga gaagcaagga catcagagct cagggcaact tccattaatg caagaaacct caggaaagag gttgaggtca 000320 000321 tacggtgttt tgttgatcgc agagttagac atgctgggtg gcattttgga gatcatgata aaagaatttg gaagctaagg 000400 000401 aaaaggtaaa tagggCATTA TGCACCTTGT ACCCGATTTA CAATTCACAT AGAATCCAAC TCCGTGAGTT CTGCAACATG 000480 000481 AAGACCCTGG AGGTTGTAAT TGGAGGAATA TGAGAATAGG CATGTTGAGG ATGCTTGGCC CAAATGGAGA TTAACAGAGG 000560 000561 TAGAGATGTG AGACAAGATA GAACTATGTC TTACAGTCTC TAAAAGGAGG GTGGGACTTT AACTTTAAGG TATCAATATT 000640 000641 TTTGTTTGTT GATAATGCAG CTTGAGAGCC AGCATTCACG ATGGCTTCCC CAAGAAGTAC TAAATCCTGA GATTCTTAGT 000720 000721 TTCTAAATAT TTCTCTAGTT AATCCTCTTT TCCCACTCCC CTCTGTTACT GCCATAGTTC AGGATCTCAT TTTCTTTCCC 000800 000801 CTGGGGTTTT GCCGAAACCA GAGTCATTAT TTGCTATGCC CCCATACGCT AAActcgtta ttttcccaca atgtcaattt 000880 000881 aactggcatt ttctacccat gccatgcctt cctaccccca catgcctttg tacttgttct cttctcctgc cttgtccttt 000960 000961 ctctccttgt tttccaggta acaaccagtc tgatttctgc cttcaggccc attttgaata ccattctgta aacacttttt 001040 001041 tgactactcc caccactttg attttacaaa cattacaatt cctcatctgt gtctctgcta ctttgcagaa gtgatttgta 001120 001121 tttgtttcct caattatact ataaattcct tgggccaaaa attatttctt atatatgttt cagtccagtc tttcatacac 001200 001201 agtaagttct cactaagagt ttgttgaata aataaTGTGA TGCATCAAAT GACACATCCA TTTCTGTTTT TCACCAAAGG 001280 001281 GTATCTCTAA ATATGTTTCC TCTTTACTTT CTCGTTAACA TCAAAGGTAG GTGGTCCCTC AATTCTCTCT TAAGTTCAAT 001360 001361 CATAAACAAA GCCCTTACTC CCAGGTTTTT TAATCCAAGT GACTTTATCA GTTCTTTCAT TTTCTTATTT ATCTCCACAC 001440 001441 TCTCTCCTTT TCAATTTGCT TTATATTTTC TGCTGTCAAG TATATCAGGT TTCAGTTATT CATCCACAGG ATCACCACCT 001520 001521 TGACTCTGCT GCTCCTTATA GATACTTCAT TTGTGCCAGA TCTTCCCGCC AAGGCGAGCT GTAAAAGCAT CTGTTTATTC 001600 001601 TTCTTGTCCA TCAGGTAATT GTGAG |
Predicted Small Protein
Name | NONHSAT076286_smProtein_1292:1522 |
Length | 77 |
Molecular weight | 8587.8866 |
Aromaticity | 0.210526315789 |
Instability index | 51.4328947368 |
Isoelectric point | 9.81976318359 |
Runs | 11 |
Runs residual | 0.00332728372656 |
Runs probability | 0.0648857413563 |
Amino acid sequence | MFPLYFLVNIKGRWSLNSLLSSIINKALTPRFFNPSDFISSFIFLFISTLSPFQFALYFL LSSISGFSYSSTGSPP |
Secondary structure | LLLEEEEEEELLLLHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHLLLHHHHHHHHH HHHHLLLEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTT Tooooooooooooooo |