NONHSAT076943
Revision as of 23:46, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076943 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1455 nt |
Genomic location |
chr2+:219575568..219620136 |
Exon number |
3 |
Exons |
219575568..219575760,219591992..219592070,219618954..219620136 |
Genome context |
|
Sequence |
000001 AGACTCTCGG TCTGTCCGCT GGGGGCGCGC GCGGTGTGTG GCAGGCGGCA GCGGCGCTGG CGGCCGAGTG CGCTTGTCAC 000080
000081 GCGTGGCGGT GCGTGGTTGC TAGGGGCGCC TGAGGCTGCC GGGTAGCCCA GCAGGCCGAG GGAGGAAGTA GCGTGGAGCC 000160 000161 GGTGCCGAGC CGGGGCGAAG CTGGATCCCC TAGatagact gtcttcaagc tcactgatat tttcctctgc ttgatccatt 000240 000241 gtgctgttga gagcctctag taaatttttc agAAACCCAG TTCCTCAAAG GACAGTGAGG ACACCAGCAA AGAGCCCAGC 000320 000321 CTTTCTACCC AGACGTTACC TGTGATCAAG TGCTCTGGGC AGACTTCAAG ACTTTCTGCT TCCTCCACTT TCCAGTCAAT 000400 000401 CAGTGACTCC CTCCTGGCTG TGAGCCCATA ACTGGCCTCT CTCCAAAAGC CTCTGCCCAG GAGCATGGGC ATCAGCTACC 000480 000481 TCACGGGAAC CAGCCTGCTG TTCAGACCAG TCTGACCCCC TACCCCTTTC ACCCTGTCCC TCCTCAGAGT ATTTTTTGAA 000560 000561 GTGGTTGCAT TATAGAGATG GGTATTTGTA GGGCCGGAGG GATGGTAGTG ATGGGGAGAA GGTGAGGAAG GGTCACCCTC 000640 000641 TGTCACCTGT CTGCCTGGCT GGCACCTCAT ATCTCAGCAG AGAAGCCAGT GGTGGCCACG CAGCCTTATA AAGCAGGTTT 000720 000721 TGGTTTCTAC CTTAAGTGAG CCATGTGTGG TTTGTCTGGG GGCCCTGGTG TGGTTGCTGA GTTGTAGCTC AAGAGGAGAA 000800 000801 AACATACAGA ACATATTTGG ACCGGAAATC CTTTGTTCTG AATTTGAGGG GGTCTTCTGA GGTCCTTACT TCCTTAGGTC 000880 000881 TTTCCTCACC CCTCTCCCAC CGCTGTCCTG AGGAGAAACC CTTGAACTTC CTCAGTAGAC AGGCGGAGAG GCCACAACAT 000960 000961 GCCGAACCCA TTTCCTGTCA TCCTAGTCTT GGGTCTTCAC CGCCTCCTTC CAAATACCCA CCCTGCCAGC AGCCCTAGGT 001040 001041 CTTCCTGTTC TGACCCCCCA TCACTGCTCG TTCAGCCTTC TAGATGTCTC TCTCGTGGAC ATCTGTTCTT TAGCTGTTGG 001120 001121 CTTTCTCTGA GGTGTGAGAG GGTCTATGAA CTTTGTGAAT TTCCCATGGC CCCAGTGAAG GAGCCCAGAT AATCCCAGTA 001200 001201 GCTGTTACCT GTCTCCATGT ATCAAAGGAC ACAGTCCAGG GGGAGGGTGG AAGGAGATGT GGTTTCTCTA TAGTGCAACA 001280 001281 AACATGGTTT CTCAATGTTC TGCTGTGCAG CAAGCAGGGT CTGGCGGCTT GGTAGGTGGG TTTCAGGAGC AGTCACTATT 001360 001361 GTAGGATGGG CTTCCAATCA AACCTCAGAC TAAACTCTTG TACTGAACTG ATTCTACCTC CCTCCTCTAG ACTCAGTAAA 001440 001441 CAGTGACTAT TCAAT |
Predicted Small Protein
Name | NONHSAT076943_smProtein_1256:1363 |
Length | 36 |
Molecular weight | 3696.1475 |
Aromaticity | 0.114285714286 |
Instability index | 42.4571428571 |
Isoelectric point | 3.99884033203 |
Runs | 8 |
Runs residual | 0.0474576271186 |
Runs probability | 0.0107313195548 |
Amino acid sequence | MWFLYSATNMVSQCSAVQQAGSGGLVGGFQEQSLL |
Secondary structure | LEEEEHHHHHHHHHHHHHHHLLLLEEELLEEEELL |
PRMN | - |
PiMo | - |