NONHSAT077315
Revision as of 23:48, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077315 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3509 nt |
Genomic location |
chr2-:231849083..231860747 |
Exon number |
6 |
Exons |
231849083..231850825,231851699..231852894,231856484..231856690,231857049..231857117,231859992..231860100,231860563..231860747 |
Genome context |
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Sequence |
000001 AGTCTTCTCT GCAGACACCA GCCTGGTGTC CTCCTTCATC CCAGGCTGCC AGGCTAGGCA GGGGACAGCG GCTGCCCTGG 000080
000081 TCCTCACAGC CCTGGCTACG GGGCTGGTGA CAGCCAGATC CTCATGCTTC TGCGACCTGA GCGCTGCCTT CAGACACCTC 000160 000161 TCTGCTGGCG TGTTCCTGGG TCCATGATGG AAGAAGGAAA AGTATTTTTA AAAGACAATC TGAAGCTCAT ACTGTGACTG 000240 000241 CAACATAAAA TGTGTTCACC TGAGGAGACT GCTTTCATCG CCAGTGTGTC ACAGATGGTG GAAACCTCAG AAGGCCACAG 000320 000321 TCCAGAGTAG GGGCTTAATG CAAGCTGCTG GAACTGAATA AAGCTGACTT Ctctgagctg gatggcaccc tggacatcaa 000400 000401 ccagcccttc accttcacgt cacacaggag ggacactggt ccatagagag gatgcctgct ctggtcacca gctggagagt 000480 000481 ggcagacctt gggtacctga cctttggact ctgccacaca gagcacttcc tcagtccctc ctgcTGCCCC TGGCAGGGTG 000560 000561 GAGCTGGCAG ggcagctgat ccaggaccgt ccacttccaa gccagcagga ggatggaaaa gcagaatgga ggggaaacaa 000640 000641 cctcctttgc agggcgtgac tcggaagttg gacacatcat ttccagccac attccatgga ccagaattag ccctgtgacc 000720 000721 aactctggct gccagaaaat ctgggaaata cagtctctgc ttgggcgatc aGGCAGGCAG TTATATCTTT GGGAACATCT 000800 000801 CTCACCCCCT GGGAACACCT GAGCAGAAAC TGAAGGACAT TTAACAGATT CTCCTTTGTG TCTAATAAGA ATTGCCCCCA 000880 000881 TCAGTCGGGG ctgtcctagg tgctgggtac ataggtcatc tatacacaac ccagcaatgg agagcacacc attcccaggc 000960 000961 tgcagatgca gaaactgtgg ctcggagagt taagcgtctt gttcagattc agtcagctgg tagatggcag gtctgggatt 001040 001041 gagacccagg cctggctgGT CCTGCCAGGA CACAGTATCA CAGCTTTGAC TGGGAGCTTC TTTTTGTTTA CATATATTTT 001120 001121 TTATGCTCAA TGTGCATTCC TTTTGAAATA CACAGAAAAG GGAAAGAAGC CGGAGTCCTG CCTTGTGTAG GAGGGATAAG 001200 001201 TTAGAGGTGT GCACCGGGAT AAATCTGCCT CCCGCGctgg ccctggccct ggccctggcc ctggccctgg ccctgatcct 001280 001281 gCTCCTGATT CTGGTCCTTG GGGCCTGGGC GGCGATTCCC GGCGCTGGCT GAGCGTCACC GGCCACCAGA GGGCGCTGCC 001360 001361 GGGCTACCGG TCCGGTCGCC CGGGGATCAC AGCCTCAGCG GACAGGAAAT GATCAACAGC TTCTCCTCTC GGATCCACGT 001440 001441 GGACTCAAGG AATCTCCGGG GGGCAGGACA GGTGCAGAGC CGAGTGCAAA GGTGGAATTC TATTCCCAAA GCACATCCCG 001520 001521 CGCCCCTTTC CTCTGCAAAG TCCCGGAACC GCGTGACTCC GGATGAGTTA TCGGGGCTGG AACCGAGGGT TCAGCCCCCT 001600 001601 GCGCCTCTGT GTGTCCCGGT CCCTTTCCTC CAAGTAGACA GGAGGCATCT CCTCATCGGC TCAGTTCACA TTCCTCCAGG 001680 001681 GGCTCAAAGG GGACCCAGTC CCTGTCTTGG GACACCAAGT CAGGCAGACT CCAGGAGAGA GGAAGGAAGA TGATTCCCGC 001760 001761 GCTCAGgtgg gcgggtcctg ctccctctgt tgaagacctg aagacaaaga ttgaccctca cccttcacct cccacctctt 001840 001841 cctcaccttg gaaaagaaaa acattcctga gaggggggat ttgtcagcag aaggctttgg gactagaact gcagcatcag 001920 001921 ctcttcctgg ttccccagcg cccaggccta ccctgcagat gtgggcttac tggcctccac gatcagtgag ccggttcctt 002000 002001 aaaatcaacc tctctctctt cctctgtctc tccctctctc tctctccctg tccacatccc attggttctg tttctctggg 002080 002081 gaaacctgac taataAGGGG ACTCTCAAGG CCCTGGCTGA GGATGGCAGG CCTGAAGATT CTCTGAGGCA TTCAGCATTG 002160 002161 AATGAGCACC AGCTGGGCGT GGAGCTGTGT CAGGCGCTGG GCACAGGACT CAGCCCCGGA ACCAAGTGTG GGCCCACATG 002240 002241 GTGTGGGCCT TTGTCTGTCC CTGTCATGGC TTTGGACACA CGCGTGGCCC AGAGGGGACA ACGGATCTGG GTGGCGAGGT 002320 002321 GGGAAAGCTC ACCCCAGTAT TCCTCTTGGT GGCAGCAGTC CCTTAAGGGG TCGCCTGAGT CGTGAGACCC ACAGGTGTGG 002400 002401 ACCTCCCCCC CCCCTTCCTC CCCTCTCCCC CAGTGACTTT ATCCAGCACC TGCCCTGCCC AGCCTTGCAC AGGTTACCCT 002480 002481 GTGACCCACT CACAGGGAGA TAGGGCAGCT TCTTTCTGCC CTCAGGAGCC TTGTTCTCAA GGCAGCTCAT CCAAGAGAAT 002560 002561 AACATACAGT AGATTGCCAC ACACATGACT GTGGCTTAGT CCAGGAAAGC CACTTATAAA ATCCGGAGGT GAAGGAAGAA 002640 002641 AAGATTGAAA TCTCTGTAAC AAATCCATTT CCCTCCTCCC TCCCTCCCTT CATCTCCAAA GTAGACCTGC CCCAGGGCCA 002720 002721 GGGATCCTCT CCCTGCAAGG CTAGGTAACA AGCGGATTTT TGCTTTTGAG CTTCAAGGTC CTGGCTTCTG GTGGTTTATA 002800 002801 GGTGATCTTT GAGGGTGGTT TTGACGAGAG GCTTGTTAGC TTCTCTACGC TTTTGAAACG CCCACTCTCC CCACAAGAAT 002880 002881 CTGGGACTTT GCAGAACCGG TCCAAGGTGA GAGTAGGATT AATTGCCAAA TGAGTTTTCT CATAAGCCTG GGGTCCAAAG 002960 002961 TACATTGGAC AGCCAGCAAA TGCTTATGAG GGGTTTGAAC AAGTGAAATC AAGGCTCAAG GTCATAGGAC TCAATGGAGA 003040 003041 GTGAGGCAGC TGGGATCTGG GATGACCGGC ATGGGCCTCA AAGCAGGGGG CTTGGAAATA GGCCCTGAAG AGGGGGTCGC 003120 003121 TTGCGTGGCT AGGAAGGGGT TGGGGCCCAC TAGCATTTCT CAGAATGCCT ATTTTCTTCG GCAGTGAGAG CTGGAGGGAG 003200 003201 GGATGGGTTT CTCAGCACAG TTCCAGTATG AGTGGCTGTC ACCACAGGGC GCCATTGCCA AGTCAGAAAG AAACAAAGCT 003280 003281 TAACCGCTGC CTCCTGTCCC CCATGGTCTG TGAAAGTCTC ATACtgtagt gcgtctaatg gtggcccccc aaaagataca 003360 003361 tctacattat aattcctggg acccagaaat gtgaccttat ttggaaaaag ggtctttgAC CTTATTTGGA AAAAGCGTCT 003440 003441 TTACAAATGT AAgtgacctt atttggaaaa agtgtcttta caaatgtaat tTACAACATT GAATGAGCA |
Predicted Small Protein
Name | NONHSAT077315_smProtein_965:1189 |
Length | 75 |
Molecular weight | 8424.8066 |
Aromaticity | 0.162162162162 |
Instability index | 40.492027027 |
Isoelectric point | 8.68475341797 |
Runs | 14 |
Runs residual | 0.046539222149 |
Runs probability | 0.0387172887174 |
Amino acid sequence | MQKLWLGELSVLFRFSQLVDGRSGIETQAWLVLPGHSITALTGSFFLFTYIFYAQCAFLL KYTEKGKKPESCLV |
Secondary structure | LLLEEELLLEEEEEHHHEELLLLLHHHHHEEELLLLLHHHHLLHHHHHHHHHHHHHHHHH HHHHLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiii iiiiiiiiiiiiii |