NONHSAT077431
Revision as of 23:48, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077431 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1156 nt |
Genomic location |
chr2+:233562015..233601356 |
Exon number |
4 |
Exons |
233562015..233562102,233568134..233568199,233589284..233589401,233600473..233601356 |
Genome context |
|
Sequence |
000001 GTGACGTGCG TGGCGACGTG TCGGCCATCT TGTGTTGTTG AGGCTGAGGA CTGACTGGGG TTCTGAGACT CCCTGTCCCG 000080
000081 GACCGCAGCG TTAAAAGGAT CTGAACAAAG TCTGCTCAAA TCTCCTGCTG TGAACCAGCA GAATTTTTGA ACAGagactg 000160 000161 tctcgctctg tcacccaggc tagagtgcag tggtgctatc gtaactcact ggagccctga tctaggctca aaccatcctc 000240 000241 ccacctcagc ctcccaagta gctgggacta agATGTGTTT GGACCCCGAA TATGGAATTC TCATGGAATT TTGAGATCCA 000320 000321 TCACATTGTA GTGTGGCTTC CCCCCCTCCC CTCCTTCCTT TTTCCCCAAA GTTGGTGATT GAAGATCCTC TCTTCAGTGG 000400 000401 CATCAATAAT AATAATTACT TTTTCTATTC AAACCTCGGG CAACCCCTTT GGTAATATCA GAAGTAGTAT CTAAAATAGA 000480 000481 TAAATTGGAT TTGTGTCTTA AACTCTTGGT TGTTCAGGTG GGAGTGGTTC AATAAATGAT GCAGACTTCC TGTAGTAACT 000560 000561 CTATTTGAGG AGTCTTATTA ACTTATCCTA TTAGAAATAT TTCTTTTTAT TAATATATGT AATCTCGAAG TTTTCTTAAC 000640 000641 CTTTATAGCC AGCATTTGGA GACTGAGGAG AAATCACTAT TTGAAGTTCT AAGAACCGAT GGAACTCCTG TATTTTGAGA 000720 000721 GTTTATTTAG AACATGTTAA CCTAAGTAAT GCTGTACTTG TTTTAGTTAT TCCTTTATAT TTTTAAAATG ATTTTCTTAG 000800 000801 TATCAAATTA ATATGTTTCT AAAAAAATTA GAAATAACTA GTAAGCCAGA Aataatttca acatccatgg tacacactgt 000880 000881 aaataccttg gtgtatcttt ccaggtggtt ttatgtatgc ttatttgtgt atatatacac ttatttttta caaaaatggg 000960 000961 atcatactgt accttcagtt ttgtagcctg cttaaagaaa taaccaaatc agaaacatct ttttttaatc aataaatatt 001040 001041 ttctgttgta ttaaatggtt gcattgtatg gatgtaccat catttattca actagtcttc tagatgtgac atatagaagc 001120 001121 tgttcttgat ttttcattat aaaaatattt ttaatg |
Predicted Small Protein
Name | NONHSAT077431_smProtein_812:985 |
Length | 58 |
Molecular weight | 6894.1228 |
Aromaticity | 0.19298245614 |
Instability index | 42.0633333333 |
Isoelectric point | 8.85345458984 |
Runs | 8 |
Runs residual | 0.0135964912281 |
Runs probability | 0.0461159689102 |
Amino acid sequence | MFLKKLEITSKPEIISTSMVHTVNTLVYLSRWFYVCLFVYIYTYFLQKWDHTVPSVL |
Secondary structure | LLLEEEEELLLLEEEEELEEEEEEEEEEEEEEEEEEEEEEEEEHHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTooooooooooooo |