NONHSAT077660
Revision as of 23:49, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT077660 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1653 nt |
Genomic location |
chr2-:238672595..238674103 |
Exon number |
1 |
Exons |
238672595..238674103 |
Genome context |
|
Sequence |
000001 GCTTTTTTTT TTTTTTTTTT TTTTTTTTAG AGACAGTGTC TCACTCTGTC TCCCAGGCTA GAGTACAGTG TGCAATCATA 000080
000081 GCTCACTGCA GCCTTGAACT CCTGGCCTCA AGCAATCCTC CCACCTTGGC TTCCCAATGT GCTAGGTTTA CAGGCGTGAA 000160 000161 AACATTGTGT TGTGTGTGTG TGTGTTTTTT TTTTTTTTTT TTTTAGACAG AGTTTCGCTC TTGTTGTCCA GGCTGGAGTA 000240 000241 CAATGGCTTG ATCTTGGCTC ACTGCAATCT CTGCCTCGCA GGTTCAAGCG ATTCTCCTGC CTCAGCCTCT GGAGTGGCTG 000320 000321 GGATTACAGG CGCCCACCAT CACGCCCGGC CAATTTTTTG TATTTTTAGT AGAGACAGGG TTTCACCATG TTGGCCAGGC 000400 000401 TGGCCTCGAA CTCTTGACCT CAGGTGATCC ACCTGCCTTG GCCTCCCAAT GTACTGAGAT TACAGGCATG AGCCACCACG 000480 000481 CCCGGCCAAA AACATTTAAA AAATGACTGT CCCTGCTCAA ATACTGCAGT AGGAAATGTA ATTTGACATA TATCACTTCC 000560 000561 AGAAAAAAAC TTTAAATCTT TCTATAAAAT GAATTTGATA CATCATCAGC ATGAAGTGAA GTTAAAATCT CTTACAAAGT 000640 000641 AAATTCAGGT ATATCAACAA TGAGATCCAA AAGTATCGGT TCAAGATCAA AGACTCATAT GAGGTAAAGG CAAATAAAGC 000720 000721 CCCTCATGCT TTCAGACATT TACTTGTTAT CCTTAAAATG ATTATTGTTC TAAGGTGCAA ATCTTATCAT TCAGTGACCT 000800 000801 ATTTGCTATT TGGCTGTTTA TCTCCTTTAA ATAAAATACC ATACAGGTTA TAATGTACAT TTTAAAATCA AATATGAAAG 000880 000881 TACACATATG TGAACAAGAC ATTAATTTAA ATATCAATTA TATTCATAAT ACAGAAGTCT AAGAATGCTA TTTGGTCATT 000960 000961 TCAATTAGAT GCTGATATAT TTGGTCAAGA AAACCCACAT TCCTATCAGC CTAAGGCAAA TAGTAAATGC CTCTATTTTT 001040 001041 ATTAAGTGGA CTATAAACAG TAGACATTAT TGTTTGATAC TACTGGAATG CTCTCAATTA GAACGTACAC TGATAACAAA 001120 001121 TATGTCTTTC TAATCTGGGT GATAACCTCA ATGATTACAT GGAAATCTAC AAGTAACAGT CTATAACTTA AAGCAGTAGA 001200 001201 GCACCTGGTA ATTGTCATAC AGTGCCTCTC TATGAATTTA GAACATTCTA CTTACATTGG CAGTGGAGAG AAAAGACCCC 001280 001281 TTCACACTGA GACTTCCTGT GCACCGCGCC TGCCGCCTGC CTCAGCTTAG GACATGGTAC AGTCTTCTTT GCTTTTGCCC 001360 001361 TTCTCATTCC CTCCTCTGGT ATCTTCTCTG CTTTCTGGAT TGAAGTGCCC TGGCTCTCTT CCTGGTGCCG ACAAGTCATT 001440 001441 GTTCTCTAGG CTATTGCTGT CTAAAGCTTT CCTGACGGTC TGACTTGGAT GTTCTGACAT CTCACACCTT TCTGTCTTCC 001520 001521 TCTTCTCACC CTCCTCCCTC CCCTTAGCCA TCACTTCTGG GAAGTAAAGA ACTTGACTTA GTGCCGGAAA AAAAAAAAAA 001600 001601 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT077660_smProtein_968:1132 |
Length | 55 |
Molecular weight | 6407.6802 |
Aromaticity | 0.0925925925926 |
Instability index | 57.5518518519 |
Isoelectric point | 9.59002685547 |
Runs | 12 |
Runs residual | 0.0595302619693 |
Runs probability | 0.0714832479538 |
Amino acid sequence | MLIYLVKKTHIPISLRQIVNASIFIKWTINSRHYCLILLECSQLERTLITNMSF |
Secondary structure | LEEEEELLLLLLLHHHHHHHLLEEEEHHHLLLLEEEEEEELHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooooooooo |