NONHSAT078115
Revision as of 23:51, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078115 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
456 nt |
Genomic location |
chr20-:1438675..1447477 |
Exon number |
3 |
Exons |
1438675..1438919,1444974..1445071,1447365..1447477 |
Genome context |
|
Sequence |
000001 GGGCGAAGAT GGCGGCGGAG CGACAGGAGG CGCTGAGGGA GTTCGTGGCG GTGACGGGCG CCGAGGAGGA CCGGGCCCGC 000080
000081 TTCTTTCTCG AGTCGGCCGG CTGGGACTTG CAGATCGCGC TAGCGAGCTT TTATGAGGAC GGAGGGGATG AAGACATTGT 000160 000161 GACCATTTCG CAGGCAACCC CCAGTTCAGT GTCCAGAGGC ACAGCCCCCA GTGATAATAG AGTGACATCC TTCAGAGACC 000240 000241 TCATTCATGA CCAAGATGAA GATGAGGAGG AAGAGGAAGG CCAGAGGTGA GTCTTCTAGA GGGGGTCAGG GGGACAGTTC 000320 000321 ACAGGGAAGT CCAGGGTAAT GTGTAAATCA CCTAGAACAG GACCTGGTAA ACATGTTTGG TTATTGTTAG CCATTACTAC 000400 000401 TGTGGGCTGG TCTGTGTGGG TTATATCTTA GGAAGTCTCT TCTACTCCTT GTAGCT |
Predicted Small Protein
Name | NONHSAT078115_smProtein_8:289 |
Length | 94 |
Molecular weight | 10368.9133 |
Aromaticity | 0.0752688172043 |
Instability index | 61.8775268817 |
Isoelectric point | 4.06878662109 |
Runs | 15 |
Runs residual | 0.0303663878933 |
Runs probability | 0.0365012070895 |
Amino acid sequence | MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQR |
Secondary structure | LHHHHHHHHHHHHHHLLLHHHHHHHHHHHHLLLHHHHHHHHHHLLLLLLEEEEEELLLLL LLLLLLLLLLLEELHHHHHLLLLLLHHHHHLLL |
PRMN | - |
PiMo | - |