NONHSAT078220
Revision as of 23:52, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078220 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1869 nt |
Genomic location |
chr20+:3154345..3156213 |
Exon number |
1 |
Exons |
3154345..3156213 |
Genome context |
|
Sequence |
000001 GTCGCTGCGC CCCGCCCGCG CGTGGGACCC CTCAGCCTCA CCCTCTCTAG GGCGCAGCAA GTCCGCCGCG AGCCCCTCTG 000080
000081 CTCATCGCTC GTTACCCCCC AGGCCCTTGG GCTTGGGCTC AGGCCCAGTC GTTCCTCTGC AACAAATCCA ATGGAACCGC 000160 000161 GCCCTCCCTG AATCCCACGT CTAGGAAGAG GAGGAGGAGC CCCTCTTGCT TGGGGGAAGG GGCTCCCGAC TCGGAGCCCC 000240 000241 GAGCCCCATT CCTCTCCCGC GCCAGCTCTT CGGGACGCGG CCTCCCAGCG GACGCCCTGA GACCTTGCAA GTCCGCTAGG 000320 000321 GAGGGGTCGG GACGAGCCGT CGCGGGTGGA TCCGCCCGGC CGAGCAACGA CCCGCCCGGG CGCGAGGACC ACGGGCTGTC 000400 000401 GTGCGGGAGG CGTCGAGGGG CAGTAAACTC CGTTCGTGAC CAAACGGAGA CGATTTGAAA CTTGCTGCTC ACACTGGATC 000480 000481 ACCGTCTGGA AGGTGCGACG GGGAAAAAAT ACACATTACA CTCCAGCAGG ATTGAACGCT TTCACCCTGT GCCCCGCGCC 000560 000561 TGGCGTAACG CGTGGCCCCA GACCACACGC TGTAACCCGG GGTGAGAGGG AGTGAGGTGG GACTTCGTAC CGGACCCGGA 000640 000641 GCGCCGGCCT CGCCCGCGCG GGCAGCGTTC ACTGTgggga gtgctcactc agcctagggc ggcccgggag gactgccggg 000720 000721 aggagggagt cggccttgaa ttgaggcctc agccttgaat agggtaggga ggcaagccta gccgagagtt tagcactagc 000800 000801 aaaagcctgg aggcACCAGG GTCTGCCCTA AGAACTGCAG CGCCTCTGCT CTGGCTGGGA TTTAACGCAT TACGTCTCTG 000880 000881 CTGTTTATAG GTGTTGTGTT TGGTCTTACG ACTTCGTATT CTATAGTTTT TATTTATTCC TGTTTTCTGA ATTTTCCCAC 000960 000961 ATTTGCTTTT ATCTTCTATC GTGATTTTCA AGGCAGAAAG TATTTTTAAT TCTTCTCGCG GCTGCCTTTA GATTTATCAA 001040 001041 ATGAAAATAG TTTACATTTC ACACATTAGT AAAGTCAGTG ACAAATAATT CGTTTTTATA TTCCCCCATG AGAAATTTTG 001120 001121 TGTGCTTTTC TGCCTCCTAC CTGCCGCCCT CACTACTTAT ATTTGTCCAC TTAATCAGGA CGACAGACCT AACTTTTGTT 001200 001201 TACACTTTTT TTTTAAGCCA CAACATTCTT TTTCAATCCT TGTTTTTGGC TTTTGCCaac tctgtttaat tggtttcaat 001280 001281 gttactgccg gttttttgtg ctctaatttt tctattcctc atttggaccc atctctcaca tgactggtga tttcagggag 001360 001361 gactctggaa tgttgtattt cctaagcctt tgccttaggt gagaatgcct ttataatgat ttcctgttta taggattctt 001440 001441 gagtctcaag ctttccccct caaaactctt gtctttattt cattgtcttc tggcactgaa aatgcaaagc tgggtttgtc 001520 001521 tgtttaaggt cagcagtttg cttggtgctt gcaagggttt ttctttaccc tcaaaagtca aacattttgc cagtataaat 001600 001601 caatatgggc cttatctatt aattttccag aaacaaaaga ggtcttcttt gtagcttaga aaagttttct tcCTGTCCAT 001680 001681 TCTGTGAAAA GATTTGGGTT TTTTTCTTTC CTCTCCTCTA AAACTATCAC ATTGGATCAC CAATGTCAAA TAAatctgtt 001760 001761 tgttttctct gcaccctggg agactatatc aagtttttct tcaccattac ggatttaatt ttcttcagag ccaagagtac 001840 001841 tgtttatttt ctccaataag acatttgat |
Predicted Small Protein
Name | NONHSAT078220_smProtein_1742:1858 |
Length | 39 |
Molecular weight | 4509.3112 |
Aromaticity | 0.236842105263 |
Instability index | 40.4710526316 |
Isoelectric point | 8.76812744141 |
Runs | 8 |
Runs residual | 0.0379155124654 |
Runs probability | 0.0290143084261 |
Amino acid sequence | MSNKSVCFLCTLGDYIKFFFTITDLIFFRAKSTVYFLQ |
Secondary structure | LLLLEEEEEELLLLHHHHHHHHHHHHHHEELLEEEEEL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooo |